Factsheet for TraesCS4D01G339300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G084370.1	Barley	cytosol	21.63	93.1
TraesCS4B01G344200.1	Wheat	cytosol	89.45	92.93
TraesCS5A01G513000.1	Wheat	cytosol	90.39	91.49
HORVU4Hr1G084330.1	Barley	cytosol	85.71	84.92
TraesCS2D01G357400.1	Wheat	cytosol, nucleus, peroxisome	60.48	70.12
EER95529	Sorghum	nucleus	59.68	68.77
OQU93258	Sorghum	cytosol	60.35	64.39
Zm00001d027621_P001	Maize	cytosol	59.95	60.03
TraesCS5D01G348200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	42.99	56.69
TraesCS5D01G472700.1	Wheat	cytosol	43.12	53.83
TraesCS1D01G433500.1	Wheat	cytosol	41.66	52.97
TraesCS1D01G144900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome, plastid	45.93	50.37
TraesCS4D01G351600.1	Wheat	plastid	35.65	47.09
TraesCS2D01G459400.1	Wheat	mitochondrion	31.91	45.61
TraesCS2D01G361900.1	Wheat	mitochondrion	38.72	41.91
TraesCS6D01G207700.2	Wheat	mitochondrion	39.25	41.41
TraesCS4D01G339200.1	Wheat	mitochondrion	38.18	40.45
TraesCS6D01G360000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	36.85	37.4
TraesCS5D01G016400.1	Wheat	cytosol	18.69	28.93
TraesCS7D01G434400.1	Wheat	cytosol	20.03	28.79
TraesCS5D01G016600.1	Wheat	cytosol	19.49	27.92
TraesCS7D01G010200.1	Wheat	cytosol	19.49	27.86
TraesCS3D01G516600.1	Wheat	cytosol	18.96	27.2
TraesCS2D01G043700.1	Wheat	peroxisome	23.5	23.07
TraesCS5D01G182800.1	Wheat	cytosol, plastid	16.29	21.48
TraesCS7D01G418800.1	Wheat	cytosol, peroxisome, plasma membrane	18.56	19.09
TraesCS6D01G009300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	18.02	18.24
TraesCS5D01G016700.1	Wheat	mitochondrion	19.23	16.76

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF13768	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF72	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS4D01G339300	EnsemblPlants:TraesCS4D01G339300.1	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
TIGR:cd01466	TIGR:cd16448	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chr4D:-:497150793..497160932

Molecular Weight (calculated)

79799.0 Da

IEP (calculated)

5.975

GRAVY (calculated)

-0.352

Length

749 amino acids

Sequence
(BLAST)

001: MEIPDQQPAV AVAEMEAPDQ ENPCAICLGG MAAGGGQATF TAECSHTFHF NCISASVAHG HLVCPLCNAR WRELPFLRPT APVPQPPTLP RLGRPVPMHG
101: VQPPSEPTAS PPLMHGGMPP FPAQAPPPPR GHIMQHHQPP PPNVHVVQHH QPPPPVHTVQ HHQPPPPEPT VVFDDDEQVE PASRPPADST PAAASNGAVV
201: VNTHAEYSAV ARDSSSDNFA VLVHVKAPAM ADTVAAGSDK PPPRAPLDLV TVLDVSGSMS GHKLALLKQA MRFVIDNLGP NDRLSVVSFS SEARRLTRLT
301: RMSDAGKALA VSAVESLAAR GGTNIAEGLR TAAKVLDERR HRNAVSSVVL LSDGQDTYTM MRRRGPSGVQ ANNYEELVPP SFARTGADGE WSAPIHTFGF
401: GNDHDAAAMH VIAEATGGTF SFIENEAVIQ DAFAQCIGGL LSVVVQEARI AVACVHPGVR VVSVKSGRYE SRVDEDGCAA SVRVGELYAD EERRFLLFLT
501: VPRVEATDGD TTALARVVFS YRNAASGAEV SVTAEDTVVA RPEHAPSASE RSVEVERERV RVEAAEDIAA ARAAAERGEH QEAVEILDNR QRALEQSEAA
601: GDGDPMIVAL GAELQEMRGR VSNRQSYMRS GRAYMLAGMS AHQQQRATSR QMLEPEEQQT SMMARNSGVR RMIRRGVGSS GGGYMAAAAP VAEASNEATM
701: SYATPAMRAM LLRSREARGA SAEQGQQEEQ QPMAGKDDAG SSGPKDVNQ

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.