Factsheet for TraesCS5A01G513000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G084370.1	Barley	cytosol	21.76	92.53
TraesCS4B01G344200.1	Wheat	cytosol	90.0	92.37
TraesCS4D01G339300.1	Wheat	cytosol	91.49	90.39
HORVU4Hr1G084330.1	Barley	cytosol	85.41	83.6
TraesCS5A01G513100.1	Wheat	cytosol, plastid	49.05	73.48
TraesCS2A01G358400.2	Wheat	cytosol, nucleus, peroxisome	62.03	70.29
EER95529	Sorghum	nucleus	59.05	67.23
OQU93258	Sorghum	cytosol	60.54	63.82
Zm00001d027621_P001	Maize	cytosol	60.54	59.89
TraesCS5A01G284900.1	Wheat	cytosol, mitochondrion, plastid	22.3	57.29
TraesCS3A01G393700.1	Wheat	cytosol	38.65	54.27
TraesCS7A01G423300.1	Wheat	cytosol	42.97	53.72
TraesCS5A01G359200.1	Wheat	cytosol, peroxisome, plastid	36.35	51.34
TraesCS1A01G421500.1	Wheat	plastid	39.86	46.9
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	39.59	42.1
TraesCS6A01G227300.1	Wheat	mitochondrion	40.41	42.05
TraesCS5A01G512800.2	Wheat	mitochondrion	39.19	41.02
TraesCS6A01G375500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	37.57	37.82
TraesCS1A01G146700.1	Wheat	mitochondrion	29.59	33.74
TraesCS5A01G011500.1	Wheat	cytosol	19.19	28.4
TraesCS4A01G484700.1	Wheat	cytosol, unclear	19.59	27.67
TraesCS7A01G010300.1	Wheat	nucleus, unclear	19.46	27.48
TraesCS5A01G011700.1	Wheat	cytosol	19.46	27.38
TraesCS2A01G045100.1	Wheat	peroxisome	23.92	23.29
TraesCS5A01G178300.1	Wheat	mitochondrion	16.35	22.96
TraesCS7A01G426800.1	Wheat	cytosol, peroxisome, plasma membrane	18.78	19.17
TraesCS6A01G006500.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	18.24	19.09
TraesCS5A01G011800.1	Wheat	plastid	18.92	16.49

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	ncoils:Coil	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF13768	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089
PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF72	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS5A01G513000	EnsemblPlants:TraesCS5A01G513000.1	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	TIGR:cd01466	TIGR:cd16448	SEG:seg	InterPro:vWFA_dom_sf	:

Description

No Description!

Coordinates

chr5A:-:676949352..676951704

Molecular Weight (calculated)

79291.7 Da

IEP (calculated)

6.299

GRAVY (calculated)

-0.364

Length

740 amino acids

Sequence
(BLAST)

001: MEAPDQENPC AICLGGMAAG GGQATFTAEC SHTFHFNCIS ASVAHGHLVC PLCNARWREL PFLRPTAPVP QPQPRTLPRL GRPVPMHAVQ PPSEPIASPP
101: LMHGGMPPFP AQVPLPPHGH IMQHHQPPPP PPDAQIMQHH QPPPHVHTVQ HHQPPPEPAV VFNDDEQVEP ASGQPADSTP AAASNGAVVV KTHAEYSAVA
201: RDSSSDNFAV LVHVKAPSMA NTVAAGSDKP PPRAPLDLVT VLDVSGSMSG HKLALLKQAM RFVIDNLGPD DRLSIVSFSS EARRLTRLTR MSDAGKALAV
301: SAVESLVARG GTNIAEGLRT AAKVLDERRH RNAVSSVVLL SDGQDTYTMM RRRGSSGVQA NNYEELVPPS FARTGADGEW SAPIHTFGFG NDHDAAAMHV
401: IAEATGGTFS FIEKEAVIQD AFAQCIGGLL SVVVQEARIA VSCVHPGVRV VSVKSGRYES RVDEDGRAAS VRVGELYADE ERRFLLFLAV PRAEATDGDT
501: TALVKVVFSY RNAATGAEVS VTAEDTAVAR PEHAPSASER SVEVERERIR VEAAEDIAAA RAAAERGEHQ EAVEILENRQ RALEQSEAAG DGDPMIMALG
601: AELQEMRERV SDRQSYMRSG RAYMLAGMSA HQQQRATSRQ MLEPEEQQTL MRARNGGPRR MIRRGVGSIA GGYRAAAPVA EASNEATMSY ATPAMRAMLL
701: RSRVARGAST EQGQQEEQPP MAGEEDAGSS EVKIQAPKET

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.