Factsheet for TraesCS4A01G484700.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, unclear
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G010200.1	Wheat	cytosol	96.76	96.76
TraesCS7A01G010300.1	Wheat	nucleus, unclear	95.42	95.42
HORVU7Hr1G001030.5	Barley	cytosol	85.31	85.14
TraesCS5A01G011700.1	Wheat	cytosol	60.5	60.27
TraesCS5A01G011500.1	Wheat	cytosol	56.87	59.6
Zm00001d024886_P002	Maize	cytosol	47.14	47.87
Zm00001d024014_P001	Maize	cytosol	45.61	47.51
KXG20893	Sorghum	cytosol, plastid	46.95	40.26
TraesCS5A01G284900.1	Wheat	cytosol, mitochondrion, plastid	15.65	28.47
TraesCS6A01G006500.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	36.26	26.87
TraesCS7A01G426800.1	Wheat	cytosol, peroxisome, plasma membrane	36.83	26.62
TraesCS5A01G359200.1	Wheat	cytosol, peroxisome, plastid	25.57	25.57
TraesCS5A01G513100.1	Wheat	cytosol, plastid	23.86	25.3
TraesCS7A01G423300.1	Wheat	cytosol	27.1	23.99
TraesCS3A01G393700.1	Wheat	cytosol	24.05	23.91
TraesCS2A01G358400.2	Wheat	cytosol, nucleus, peroxisome	26.91	21.59
TraesCS1A01G421500.1	Wheat	plastid	24.43	20.35
TraesCS6A01G227300.1	Wheat	mitochondrion	27.1	19.97
TraesCS5A01G513000.1	Wheat	cytosol	27.67	19.59
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	25.95	19.54
TraesCS5A01G512800.2	Wheat	mitochondrion	26.34	19.52
TraesCS6A01G375500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	24.62	17.55
TraesCS1A01G146700.1	Wheat	mitochondrion	20.8	16.8
TraesCS2A01G045100.1	Wheat	peroxisome	19.85	13.68
TraesCS5A01G011800.1	Wheat	plastid	22.14	13.66
TraesCS5A01G178300.1	Wheat	mitochondrion	12.79	12.71

Protein Annotations

EnsemblPlants:TraesCS4A01G484700.1	EnsemblPlantsGene:TraesCS4A01G484700	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR036465	InterPro:VWF_A
InterPro:Vwaint_dom	InterPro:vWFA_dom_sf	ncoils:Coil	PANTHER:PTHR10579	PANTHER:PTHR10579:SF64	PFAM:PF00092
PFAM:PF14624	PFscan:PS50234	SEG:seg	SMART:SM00327	SUPFAM:SSF53300	MapMan:35.2

Description

No Description!

Coordinates

chr4A:+:738815226..738817010

Molecular Weight (calculated)

55402.5 Da

IEP (calculated)

4.482

GRAVY (calculated)

-0.219

Length

524 amino acids

Sequence
(BLAST)

001: MAFNDDEKPP ASNAGNTKGL VTITEPKFSK DAAALSADEV TAVVELKATS STAVREGLDL VAVLDVSGSM QGDKLQSMKM AMQFVIMKLT PVDRLSVVSF
101: SGSATRHCPL RSVTQQAQAD LKAIVDGLVA NGGTNIKAGL DTALAIVAGR ATTKARTPNV FLMSDGQQSD GDARQVDPGN VAVYTFGFGK DADHALLSDV
201: AKKSPGGTFN SVPDGGNVSA PFSQLLGGLL TIVAQDVQLT LTPKAEDPTA PDLDTMTVAP GTDYTQTTDG DTGVITIKFG TLFSGETRKV AINFKLLEST
301: LTTAYDGLVA EAQHSYTVQG SLQGQTPQDV VIPRSPDAPA DPPTSGKAQA VLAEMARRQH AGAIGEARQM ADGKNLEEAR YKLADAQNAL EDIVLNDGEK
401: LVGMLRAELQ QLLDLMETQE LYEAEGRPYA LASETSHGRQ RYAARGGDMD AVRLFATPRM DTYLEQAKKF EEDPTAPLPS ADDDAKEEMA ANPLAAISAP
501: IAFYIKVAIQ ALQEIEKLVA PPTK

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.