Factsheet for TraesCS6A01G006500.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

cytosol 1
mitochondrion 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, endoplasmic reticulum, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G009300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	95.62	91.35
TraesCS7A01G426800.1	Wheat	cytosol, peroxisome, plasma membrane	56.72	55.31
Zm00001d024014_P001	Maize	cytosol	27.72	38.97
Zm00001d024886_P002	Maize	cytosol	28.29	38.76
TraesCS4A01G484700.1	Wheat	cytosol, unclear	26.87	36.26
TraesCS7A01G010300.1	Wheat	nucleus, unclear	26.59	35.88
TraesCS5A01G011500.1	Wheat	cytosol	24.19	34.2
TraesCS5A01G011700.1	Wheat	cytosol	24.89	33.46
TraesCS5A01G284900.1	Wheat	cytosol, mitochondrion, plastid	11.6	28.47
TraesCS5A01G513100.1	Wheat	cytosol, plastid	17.11	24.49
TraesCS5A01G359200.1	Wheat	cytosol, peroxisome, plastid	17.82	24.05
TraesCS7A01G423300.1	Wheat	cytosol	19.38	23.14
TraesCS3A01G393700.1	Wheat	cytosol	16.55	22.2
TraesCS2A01G358400.2	Wheat	cytosol, nucleus, peroxisome	18.39	19.91
TraesCS1A01G421500.1	Wheat	plastid	17.26	19.4
TraesCS5A01G512800.2	Wheat	mitochondrion	18.81	18.81
TraesCS5A01G513000.1	Wheat	cytosol	19.09	18.24
TraesCS6A01G227300.1	Wheat	mitochondrion	17.96	17.86
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	17.4	17.67
TraesCS1A01G146700.1	Wheat	mitochondrion	15.7	17.1
TraesCS6A01G375500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	17.4	16.73
TraesCS5A01G011800.1	Wheat	plastid	17.96	14.96
TraesCS5A01G178300.1	Wheat	mitochondrion	9.76	13.09
TraesCS2A01G045100.1	Wheat	peroxisome	11.74	10.92

Protein Annotations

EnsemblPlants:TraesCS6A01G006500.1	EnsemblPlantsGene:TraesCS6A01G006500	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR036465	InterPro:VWF_A
InterPro:vWFA_dom_sf	ncoils:Coil	PANTHER:PTHR10579	PANTHER:PTHR10579:SF64	PFAM:PF00092	PFscan:PS50234
SMART:SM00327	SUPFAM:SSF53300	TMHMM:TMhelix	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6A:-:2408129..2411787

Molecular Weight (calculated)

78022.2 Da

IEP (calculated)

8.619

GRAVY (calculated)

-0.118

Length

707 amino acids

Sequence
(BLAST)

001: MSFHFDDEDQ NVPYAYYTPG TLQRDTAQNV WLVPHTATNR APLQEHKQQV LLELIGASST SERSGLDLVA VLDISYSMTG ANRLGRMKTA MQFVIRKLSP
101: NDRLSIVTFS DDAQMLCHLR SMTQASKAHL EDLVDGLGVI NMTNMEAGLK TGHQILDGRR IARGRVASIF VLSDGDQNKG DARTVDVSDV AVYTFGFGAD
201: SNHKVLGEIA MKSKGGTFNF VEDGESMSEP FSQILGGLLS IVVQDLKLTV SPKPGDSTIE KVNAGLYQQT KDTNTGSVTV SFGDLFAAEL RNIMIDVLLP
301: TVHRSKNVTV IIASCTYSIN GKPFVSHEFR VTIRRTGSAD PSSPISEAVL TEQVRQIYIE DLRQAITLAD SVGLQGANTK LVEARNNLQL EQSNSMIDIL
401: RAQLDKLIEL ISSGMGLKAL RACLLSMMML HGRQRVTETG PVMGHKLYVT QFTDMSRKQA GDHEKDPAKV PPPASQDVEQ AKVVRDQQGI KRPPAVVEAA
501: TCSWRTWWRD RKSHHESSRW AMVILCTVLA VAMIVIGVTL LAVYLLNMPK MPYLVVSDAQ LGALRYAQQD GTIQYLQLPI TILAENNNSK ADATFSHVDL
601: ALQFHGVDVA LLRTPAPFVV AAESSLALQY NVVSTGRRLD PAGMRSMDES LNAGMVPFDL RGKARARWKV GIFLKAHFWT RISCRLHFFF PGNSTVMPTD
701: LRRCRSR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.