Factsheet for TraesCS6D01G009300.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, endoplasmic reticulum, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G006500.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	91.35	95.62
TraesCS7D01G418800.1	Wheat	cytosol, peroxisome, plasma membrane	55.95	56.87
Zm00001d024014_P001	Maize	cytosol	27.16	39.96
Zm00001d024886_P002	Maize	cytosol	27.57	39.53
TraesCS7D01G010200.1	Wheat	cytosol	25.54	36.07
TraesCS7D01G434400.1	Wheat	cytosol	24.86	35.32
TraesCS5D01G016400.1	Wheat	cytosol	22.84	34.92
TraesCS3D01G516600.1	Wheat	cytosol	24.59	34.87
TraesCS5D01G016600.1	Wheat	cytosol	23.65	33.46
TraesCS1D01G433500.1	Wheat	cytosol	17.7	22.24
TraesCS5D01G348200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	17.03	22.18
TraesCS5D01G472700.1	Wheat	cytosol	17.7	21.83
TraesCS2D01G357400.1	Wheat	cytosol, nucleus, peroxisome	18.11	20.74
TraesCS2D01G459400.1	Wheat	mitochondrion	14.46	20.42
TraesCS1D01G144900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome, plastid	17.43	18.89
TraesCS4D01G339200.1	Wheat	mitochondrion	17.7	18.53
TraesCS4D01G351600.1	Wheat	plastid	14.19	18.52
TraesCS6D01G207700.2	Wheat	mitochondrion	17.43	18.17
TraesCS4D01G339300.1	Wheat	cytosol	18.24	18.02
TraesCS2D01G361900.1	Wheat	mitochondrion	16.76	17.92
TraesCS6D01G360000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	16.62	16.67
TraesCS5D01G016700.1	Wheat	mitochondrion	16.49	14.2
TraesCS5D01G182800.1	Wheat	cytosol, plastid	10.0	13.03
TraesCS2D01G043700.1	Wheat	peroxisome	11.76	11.4

Protein Annotations

EnsemblPlants:TraesCS6D01G009300.1	EnsemblPlantsGene:TraesCS6D01G009300	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR036465	InterPro:LEA_2
InterPro:VWF_A	InterPro:vWFA_dom_sf	ncoils:Coil	PANTHER:PTHR10579	PANTHER:PTHR10579:SF64	PFAM:PF00092
PFAM:PF03168	PFscan:PS50234	SEG:seg	SMART:SM00327	SUPFAM:SSF53300	TMHMM:TMhelix
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:3600161..3602704

Molecular Weight (calculated)

81848.7 Da

IEP (calculated)

8.678

GRAVY (calculated)

-0.129

Length

740 amino acids

Sequence
(BLAST)

001: MSFDFDDEDQ NVPYAYYTPG DFIPLSFFIG SIHKSIISFT DKTCQSTVFL MHAGTLQRDT AQNVWLVPHT ATNRAPLQQN KQQVLLELIG ASSTSERSGL
101: DLVAVLDISY SMTGENRLGR MKTAMQFVIK KLSPNDRLSI VTFSDDAERR CHLRSMTQAS KAHLEDLVDG LGVINMTNMK AGLETGHKIL DDRRIARGRA
201: ASIFILSDGD QNKGDATTVD VSDVAVYTFG FGADSNHKVL GEIAMKSKGG TFNFVEDGES MSEPFSQILG GLLSIVVQDL KLTVSPNPGD STIEKVNAGL
301: YLQTKDTNTG SVTVSFGDLF AAELRNIMID VLLPTVHRSK NVTVIIASCT YSINGKPFVS HEFRVTIRRT GSADPSSPIS EAVLTEQVRQ IYIEDLRQAI
401: TLADSVGLQG ANNKLVEARN NLQLERSNSM IDILRAQLDK LIELISSGMG LRALRACLLS MMMLHGRQRV TETGPVMGHK LYVTQFTDMS RKQAGDHEKD
501: PAKVPPPASQ DVDQAKIVRD QQGIKRPPAV VEATTCSWRT WWRDRKSHHE SSRWAMAILC TVLAIAMIVI GVTLLAVYLL NMPKMPYLVV SDAQLGALRY
601: AQQDGTIQYL QLPITILAEN NNSKADATFS RVDLALQFHG VDVALLRTPA PFVVAAESSL PLQYNVVSTG RRLDPAGMRS MDQSLNAGMV PFDLRGKART
701: RWKVGIFLKA HFWTRISCRL HFFPSNSTVM PTDLRRCRSR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.