Factsheet for TraesCS6A01G227300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G207700.2	Wheat	mitochondrion	98.31	98.45
TraesCS6B01G254400.1	Wheat	mitochondrion	97.47	97.61
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	96.34	96.21
Zm00001d017247_P002	Maize	mitochondrion	82.7	84.48
OQU85324	Sorghum	mitochondrion	83.4	84.35
Os02t0619600-01	Rice	mitochondrion	83.97	84.2
Zm00001d051119_P001	Maize	nucleus	78.9	81.54
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	70.46	71.98
GSMUA_Achr5P20480_001	Banana	mitochondrion	53.16	59.62
GSMUA_Achr11P...	Banana	mitochondrion	51.2	58.24
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	51.05	56.72
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	53.73	53.8
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	54.29	52.95
CDY31517	Canola	extracellular, mitochondrion, plastid	44.44	52.84
Bra005066.1-P	Field mustard	mitochondrion	47.82	51.83
CDY52708	Canola	extracellular, mitochondrion, plastid	43.88	51.83
GSMUA_Achr11P...	Banana	mitochondrion	38.96	51.49
PGSC0003DMT400059986	Potato	nucleus	52.6	51.44
Solyc05g056140.2.1	Tomato	nucleus	52.32	51.1
CDX91506	Canola	mitochondrion	43.6	50.99
CDX74871	Canola	mitochondrion	43.74	50.98
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	50.35	50.85
Bra020234.1-P	Field mustard	mitochondrion	49.65	50.79
TraesCS6A01G375500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	52.46	50.75
PGSC0003DMT400020896	Potato	mitochondrion, plastid	51.62	50.07
Solyc11g069600.1.1	Tomato	plastid	51.34	49.8
AT2G38970.1	Thale cress	mitochondrion	48.38	49.71
TraesCS5A01G512800.2	Wheat	mitochondrion	49.37	49.65
Bra002456.1-P	Field mustard	mitochondrion, plastid	48.38	49.14
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	37.13	48.98
CDY67781	Canola	cytosol	36.15	48.58
CDY32819	Canola	cytosol	40.37	47.52
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	40.23	46.81
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	44.3	46.19
AT1G08050.1	Thale cress	plastid	41.35	45.87
TraesCS5A01G284900.1	Wheat	cytosol, mitochondrion, plastid	18.0	44.44
TraesCS2A01G358400.2	Wheat	cytosol, nucleus, peroxisome	40.51	44.1
CDX93597	Canola	cytosol	39.66	43.86
GSMUA_Achr2P11780_001	Banana	golgi	28.83	43.43
CDX95099	Canola	cytosol	34.32	43.42
TraesCS5A01G513100.1	Wheat	cytosol, plastid	30.1	43.32
TraesCS3A01G393700.1	Wheat	cytosol	31.93	43.07
TraesCS5A01G359200.1	Wheat	cytosol, peroxisome, plastid	31.08	42.18
TraesCS7A01G423300.1	Wheat	cytosol	34.04	40.88
TraesCS5A01G513000.1	Wheat	cytosol	42.05	40.41
TraesCS1A01G146700.1	Wheat	mitochondrion	34.6	37.9
TraesCS1A01G421500.1	Wheat	plastid	32.49	36.73
TraesCS7A01G010300.1	Wheat	nucleus, unclear	20.82	28.24
TraesCS4A01G484700.1	Wheat	cytosol, unclear	19.97	27.1
TraesCS5A01G011500.1	Wheat	cytosol	18.99	27.0
TraesCS5A01G011700.1	Wheat	cytosol	19.13	25.86
TraesCS5A01G178300.1	Wheat	mitochondrion	17.86	24.1
TraesCS2A01G045100.1	Wheat	peroxisome	25.6	23.95
Bra018663.1-P	Field mustard	nucleus	39.1	21.08
TraesCS6A01G006500.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	17.86	17.96
TraesCS7A01G426800.1	Wheat	cytosol, peroxisome, plasma membrane	18.28	17.93
TraesCS5A01G011800.1	Wheat	plastid	17.58	14.72

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF49	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS6A01G227300	EnsemblPlants:TraesCS6A01G227300.1	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
TIGR:cd01466	TIGR:cd16448	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chr6A:+:428067653..428073588

Molecular Weight (calculated)

77574.3 Da

IEP (calculated)

8.358

GRAVY (calculated)

-0.288

Length

711 amino acids

Sequence
(BLAST)

001: MEGMWRKAKR AMGIGFCAHL PAVAGDRDDC ASERRASDAF SQDSAALAAL AHASAPNTPA QAEAAGALLR RSKSGAKSSK KTCAICFDSM KPGHGQALFT
101: AECSHMFHFH CISSSVKHGN YVCPVCRAKW KEIPFNRSLS SIVPRGRSGL NVNQARLPQQ DAYMALLRQV PTRQREVPTL HTSEPVEFND DEPLQLMEAA
201: DNCDVSSSKT VEMKTYSEFS AIPQSSSQDD FAVLIHLKAP CANPEQITSR PVNATSVGYP TSRAPVDLVT LLDVSGSMAG TKLALLKRAM GFVIQHLGPS
301: DRLSVIAFSS TAKRLFHLRR MSHSGRQQAL QAVNSLGAGG GTNIADALKK AAKVIEDRSY KNPVCSITLL SDGQDTYNIS SNVRGTRPDY RSLVPSSILN
401: QAVGIVPVHG FGFGADHDSD ALHSIAEVSG GTFSFIEDEG VIQDAFAQCI GGLLSVVVQD MRLTVQCVHT GVQLRSIKSG SYLSKVAGDG RNGSIDVGHL
501: YADEERDFLL SVSFPQSREQ TILLKVAFSY RDPVTNECIK IQGDEVMILR PRSRTPELVC MEVDRERNRV RAADSIEAAR AAAERGVLSE AVAILEECRR
601: VLLESFSSRN GDRLCMALDA ELREMQERMA SRQRYEASGR AYLLSGLSSH SWQRATTRGD STDSSSLVYS YQTPSMVQML QRSQNQCPSP QIPRPQIIVP
701: TRSFIQKPQP R

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.