Factsheet for Bra005066.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74871	Canola	mitochondrion	91.92	98.85
AT2G38970.1	Thale cress	mitochondrion	87.35	82.8
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	68.29	63.1
PGSC0003DMT400059986	Potato	nucleus	64.48	58.18
Solyc05g056140.2.1	Tomato	nucleus	64.33	57.97
Bra002456.1-P	Field mustard	mitochondrion, plastid	57.47	53.86
Bra020234.1-P	Field mustard	mitochondrion	57.01	53.81
GSMUA_Achr5P20480_001	Banana	mitochondrion	51.37	53.15
GSMUA_Achr11P...	Banana	mitochondrion	50.3	52.8
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	50.61	51.88
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	47.26	50.74
GSMUA_Achr11P...	Banana	mitochondrion	41.46	50.56
TraesCS2B01G382300.1	Wheat	mitochondrion	51.98	49.06
TraesCS2D01G361900.1	Wheat	mitochondrion	51.68	48.99
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	51.52	48.56
Zm00001d017247_P002	Maize	mitochondrion	51.37	48.42
TraesCS6B01G254400.1	Wheat	mitochondrion	51.98	48.03
TraesCS6D01G207700.2	Wheat	mitochondrion	51.98	48.03
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	51.98	47.89
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	51.07	47.86
TraesCS6A01G227300.1	Wheat	mitochondrion	51.83	47.82
Os02t0619600-01	Rice	mitochondrion	51.52	47.67
Zm00001d051119_P001	Maize	nucleus	49.85	47.53
OQU85324	Sorghum	mitochondrion	50.61	47.23
Os04t0508800-01	Rice	plasma membrane	50.15	46.47
OQU81931	Sorghum	mitochondrion	48.93	46.05
Zm00001d025825_P001	Maize	mitochondrion	48.93	45.6
Zm00001d027622_P001	Maize	mitochondrion	47.41	44.94
OQU93256	Sorghum	mitochondrion	47.56	44.7
Os03t0142500-01	Rice	plasma membrane	47.1	44.52
TraesCS4B01G344100.1	Wheat	mitochondrion	47.41	43.99
TraesCS4D01G339200.1	Wheat	mitochondrion	46.8	43.42
TraesCS5A01G512800.2	Wheat	mitochondrion	46.8	43.42
HORVU4Hr1G084340.1	Barley	mitochondrion	46.49	43.14
GSMUA_Achr2P11780_001	Banana	golgi	29.73	41.31
Bra030218.1-P	Field mustard	nucleus	25.61	25.0
Bra017859.1-P	Field mustard	plastid	23.63	24.53
Bra040498.1-P	Field mustard	plastid	26.68	24.04
Bra024408.1-P	Field mustard	plastid	25.91	24.01
Bra031849.1-P	Field mustard	plastid	25.61	23.73
Bra018663.1-P	Field mustard	nucleus	46.49	23.12
Bra024913.1-P	Field mustard	mitochondrion	18.14	22.8

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EnsemblPlantsGene:Bra005066	EnsemblPlants:Bra005066.1	EnsemblPlants:Bra005066.1-P
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M4CLH9	PFAM:PF00092
PFAM:PF13639	PFAM:PF14624	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF71
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	SignalP:SignalP-noTM	UniParc:UPI00025475A6
InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

AT2G38970 (E=2e-211) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA05:-:3261534..3264356

Molecular Weight (calculated)

72377.1 Da

IEP (calculated)

7.751

GRAVY (calculated)

-0.256

Length

656 amino acids

Sequence
(BLAST)

001: MGTKWRKMKL ALGLNLCTYL PRTLEESPPA LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKKSS KTCSICLTKM KEGGGHAIFT AECSHSFHFH
101: CIASNVKHGN QVCPVCRAKW KEIPMQHPPY LLNRLPTPRR VMNQGRVLPP EPSMFNDDEP LEQQLAFPGK SLKKMMELKI HPEVSSVPRG ESREKFDVLV
201: HLRAAGMVTA PLDLVTVLDI SGSMAGTKLA PLKRAMGFVI QNLGSNDRLS VIAFSSTARR LFPLTKMSDS GRHLALQAVN SLVANGGTNI AEGLRKGVKV
301: MEERRDENPV ASVILLSDGR DTYTMNNNQP DPNYKMLLPL SMHGRFQFQI PVHSFGFGSD HDATLMHSVS EVSGGTFSFI ESEAVIQDAL AQCIGGLLSV
401: AVQELRLEID GFSSDVCLSS IKAGSYPSLV GGDGRSGRVD IGDLYADEER DFLVSINIPA ERCGDETELL KMRCVYKDLL TKEVVTLESH VLKIQRPETV
501: GEEEAVVVSI EVDRQRNRFL AAEAMVKARG LAEEGDLAAA VTVIQEFRQV LAETVSAKSN DGFCVALDRE MKEMQERMAS RHVYEVSGRA YILSGLSSHS
601: WQRATSRGES GDGSSFVQAY NYQTPSMVEM LHRSQATSYH RLIQPLLSYV SQPRPR

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.