Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU93256 | Sorghum | mitochondrion | 74.64 | 74.21 |
| TraesCS4D01G339200.1 | Wheat | mitochondrion | 75.22 | 73.83 |
| TraesCS5A01G512800.2 | Wheat | mitochondrion | 74.93 | 73.55 |
| TraesCS4B01G344100.1 | Wheat | mitochondrion | 74.78 | 73.41 |
| Zm00001d027622_P001 | Maize | mitochondrion | 72.77 | 72.98 |
| HORVU4Hr1G084340.1 | Barley | mitochondrion | 73.78 | 72.42 |
| GSMUA_Achr11P... | Banana | mitochondrion | 48.27 | 53.6 |
| Os04t0266700-00 | Rice | cytosol | 8.79 | 53.51 |
| GSMUA_Achr5P20480_001 | Banana | mitochondrion | 48.41 | 53.0 |
| GSMUA_Achr1P03470_001 | Banana | mitochondrion, plastid | 47.26 | 51.25 |
| Os02t0619600-01 | Rice | mitochondrion | 50.58 | 49.51 |
| VIT_13s0019g04440.t01 | Wine grape | endoplasmic reticulum | 50.43 | 49.3 |
| VIT_06s0004g02630.t01 | Wine grape | mitochondrion, nucleus | 51.59 | 49.11 |
| GSMUA_Achr11P... | Banana | mitochondrion | 37.9 | 48.88 |
| Os04t0508800-01 | Rice | plasma membrane | 48.7 | 47.74 |
| CDY31517 | Canola | extracellular, mitochondrion, plastid | 41.07 | 47.66 |
| CDY72156 | Canola | cytosol, endoplasmic reticulum, nucleus, plastid | 36.74 | 47.31 |
| Bra005066.1-P | Field mustard | mitochondrion | 44.52 | 47.1 |
| PGSC0003DMT400059986 | Potato | nucleus | 49.28 | 47.04 |
| Solyc05g056140.2.1 | Tomato | nucleus | 49.28 | 46.98 |
| CDY52708 | Canola | extracellular, mitochondrion, plastid | 40.63 | 46.84 |
| AT5G60710.1 | Thale cress | extracellular, mitochondrion, plastid | 47.41 | 46.73 |
| CDX74871 | Canola | mitochondrion | 40.92 | 46.56 |
| PGSC0003DMT400020896 | Potato | mitochondrion, plastid | 49.14 | 46.52 |
| CDY67781 | Canola | cytosol | 35.45 | 46.5 |
| Solyc11g069600.1.1 | Tomato | plastid | 48.99 | 46.38 |
| Os02t0806700-01 | Rice | nucleus | 48.13 | 46.2 |
| Bra020234.1-P | Field mustard | mitochondrion | 46.25 | 46.19 |
| AT2G38970.1 | Thale cress | mitochondrion | 45.97 | 46.1 |
| CDX91506 | Canola | mitochondrion | 40.35 | 46.05 |
| CDY32819 | Canola | cytosol | 39.77 | 45.7 |
| Bra030712.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus, plastid | 39.77 | 45.17 |
| Bra002456.1-P | Field mustard | mitochondrion, plastid | 45.53 | 45.14 |
| AT1G08050.1 | Thale cress | plastid | 41.07 | 44.46 |
| AT3G54780.4 | Thale cress | endoplasmic reticulum, extracellular, plastid | 41.93 | 42.67 |
| GSMUA_Achr2P11780_001 | Banana | golgi | 28.1 | 41.31 |
| CDX93597 | Canola | cytosol | 37.46 | 40.44 |
| CDX95099 | Canola | cytosol | 32.71 | 40.39 |
| Os08t0126100-00 | Rice | nucleus | 37.9 | 37.36 |
| Os12t0431700-00 | Rice | cytosol | 10.81 | 36.23 |
| Os12t0203500-00 | Rice | vacuole | 27.23 | 34.49 |
| Os08t0126000-00 | Rice | plastid | 34.58 | 31.7 |
| Os10t0464500-00 | Rice | extracellular, plasma membrane | 21.76 | 31.07 |
| Os10t0464800-00 | Rice | nucleus | 36.74 | 26.87 |
| Os09t0298500-01 | Rice | nucleus | 19.31 | 25.19 |
| Os04t0101800-01 | Rice | cytosol, mitochondrion, peroxisome, plastid | 24.35 | 24.53 |
| Os11t0687100-01 | Rice | nucleus | 22.19 | 24.33 |
| Os03t0403600-01 | Rice | cytosol, extracellular | 14.55 | 24.28 |
| Os11t0650600-00 | Rice | cytosol | 19.31 | 23.55 |
| Os11t0650500-00 | Rice | cytosol | 19.16 | 22.5 |
| Os01t0640200-00 | Rice | cytosol | 20.03 | 22.2 |
| Os06t0578100-00 | Rice | nucleus | 21.18 | 22.07 |
| Os11t0687200-02 | Rice | golgi | 18.3 | 21.24 |
| Os06t0578700-01 | Rice | golgi | 17.58 | 20.96 |
| Os11t0679000-00 | Rice | cytosol | 17.0 | 20.34 |
| Bra018663.1-P | Field mustard | nucleus | 36.74 | 19.33 |
Protein Annotations
| Gene3D:3.30.40.10 | Gene3D:3.40.50.410 | MapMan:35.1 | EntrezGene:4331583 | ProteinID:ABF93916.1 | EMBL:AK100238 |
| ProteinID:BAF10846.1 | ProteinID:BAS82232.1 | ProteinID:EAZ25536.1 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 |
| InterPro:IPR036465 | EnsemblPlantsGene:Os03g0142500 | EnsemblPlants:Os03t0142500-01 | PFAM:PF00092 | PFAM:PF14624 | PFAM:PF17123 |
| PFscan:PS50089 | PFscan:PS50234 | PANTHER:PTHR10579 | PANTHER:PTHR10579:SF54 | UniProt:Q10RY0 | SMART:SM00184 |
| SMART:SM00327 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | UniParc:UPI0000DB44A3 | InterPro:VWF_A | InterPro:Vwaint_dom |
| RefSeq:XP_015627812.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | InterPro:vWFA_dom_sf | : |
Description
RING finger protein OsRFPH2-9, RING-H2 protein 9Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0142500-01)
Coordinates
chr3:+:2336789..2341656
Molecular Weight (calculated)
75812.9 Da
IEP (calculated)
6.876
GRAVY (calculated)
-0.244
Length
694 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPAWDRAKH ALATRLCIRF PARQRAVEDA PAEDEAPPPP AAAAARAVPE EKLKSPSVSV RRLSSSGSWG KKKVCAICLG GIRTGGQALF TAECSHEFHF
101: HCISSNVNHG NYVCPVCRAE WKELPFQGTQ PGDTAYGRAR VSTVNWPQDE GQMSVVRRLS HGYSGNLQQQ LAVFRTPEAS IFNDDENIDP QSETVDDHNA
201: VTNSVEIKTY SEFPAIQKSE RRKVFAILIH LKAPKSLDSV SSRAPLDLVT VLDVSGSMSG IKLSLLKRAM SFVIQTLGPN DRLSVVAFSS TAQRLFPLRR
301: MTLTGRQQAL QAISSLVASG GTNIADALKK GAKVVKDRRR KNPVSSIILL SDGQDTHSFL SGEADINYSI LVPPSILPGT SHHVQIHTFG FGTDHDSAAM
401: HAIAETSNGT FSFIDAEGSI QDAFAQCMGG LLSVVVKDMR LCIECIDEGV SLTSIKSGSY ASQVAGNERS GLVDIGDLYA DEERGFLVTL HVPAAHGQTV
501: LIKPKCTYLD AITMENVQLD GEEVIIQRPA YCVDCTMSPE VEREWHRVQA TEDMSAARSA AEDGSFSQAV SILESRRRIL ELHAAHSSDS QFLALIKELR
601: EMQDRVESRQ RYEESGRAYM LSGLSSHSWQ RATARGDSTE LTTLINTYQT PSMVDMLQRS QTILPSVVEM LNRSSTVATS KSFSSYLPTS RHIA
101: HCISSNVNHG NYVCPVCRAE WKELPFQGTQ PGDTAYGRAR VSTVNWPQDE GQMSVVRRLS HGYSGNLQQQ LAVFRTPEAS IFNDDENIDP QSETVDDHNA
201: VTNSVEIKTY SEFPAIQKSE RRKVFAILIH LKAPKSLDSV SSRAPLDLVT VLDVSGSMSG IKLSLLKRAM SFVIQTLGPN DRLSVVAFSS TAQRLFPLRR
301: MTLTGRQQAL QAISSLVASG GTNIADALKK GAKVVKDRRR KNPVSSIILL SDGQDTHSFL SGEADINYSI LVPPSILPGT SHHVQIHTFG FGTDHDSAAM
401: HAIAETSNGT FSFIDAEGSI QDAFAQCMGG LLSVVVKDMR LCIECIDEGV SLTSIKSGSY ASQVAGNERS GLVDIGDLYA DEERGFLVTL HVPAAHGQTV
501: LIKPKCTYLD AITMENVQLD GEEVIIQRPA YCVDCTMSPE VEREWHRVQA TEDMSAARSA AEDGSFSQAV SILESRRRIL ELHAAHSSDS QFLALIKELR
601: EMQDRVESRQ RYEESGRAYM LSGLSSHSWQ RATARGDSTE LTTLINTYQT PSMVDMLQRS QTILPSVVEM LNRSSTVATS KSFSSYLPTS RHIA
001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR
Arabidopsis Description
Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]
SUBAcon: [mitochondrion,plastid,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.