Factsheet for GSMUA_Achr1P03470_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20480_001	Banana	mitochondrion	63.28	63.88
GSMUA_Achr11P...	Banana	mitochondrion	60.94	62.4
GSMUA_Achr11P...	Banana	mitochondrion	46.72	55.58
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	59.22	53.38
CDY31517	Canola	extracellular, mitochondrion, plastid	49.53	53.01
Zm00001d017247_P002	Maize	mitochondrion	57.34	52.73
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	59.84	52.54
OQU85324	Sorghum	mitochondrion	57.5	52.35
CDY52708	Canola	extracellular, mitochondrion, plastid	49.22	52.33
Zm00001d051119_P001	Maize	nucleus	55.94	52.03
TraesCS6D01G207700.2	Wheat	mitochondrion	57.03	51.41
TraesCS2D01G361900.1	Wheat	mitochondrion	55.47	51.3
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	55.78	51.29
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	57.03	51.26
TraesCS2B01G382300.1	Wheat	mitochondrion	55.62	51.22
Os02t0619600-01	Rice	mitochondrion	56.72	51.2
TraesCS6B01G254400.1	Wheat	mitochondrion	56.72	51.13
TraesCS6A01G227300.1	Wheat	mitochondrion	56.72	51.05
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	55.94	50.85
Solyc11g069600.1.1	Tomato	plastid	57.97	50.61
Bra005066.1-P	Field mustard	mitochondrion	51.88	50.61
PGSC0003DMT400059986	Potato	nucleus	57.34	50.48
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	55.16	50.43
PGSC0003DMT400020896	Potato	mitochondrion, plastid	57.34	50.07
CDX74871	Canola	mitochondrion	47.66	50.0
Os04t0508800-01	Rice	plasma membrane	55.16	49.86
Solyc05g056140.2.1	Tomato	nucleus	56.56	49.73
CDX91506	Canola	mitochondrion	47.19	49.67
Bra020234.1-P	Field mustard	mitochondrion	53.91	49.64
GSMUA_Achr2P11780_001	Banana	golgi	36.41	49.36
Bra002456.1-P	Field mustard	mitochondrion, plastid	53.91	49.29
GSMUA_Achr6P36520_001	Banana	plastid	53.59	49.07
AT2G38970.1	Thale cress	mitochondrion	52.81	48.84
OQU93256	Sorghum	mitochondrion	52.81	48.42
Zm00001d027622_P001	Maize	mitochondrion	52.34	48.41
OQU81931	Sorghum	mitochondrion	52.19	47.92
Os03t0142500-01	Rice	plasma membrane	51.25	47.26
TraesCS5A01G512800.2	Wheat	mitochondrion	51.72	46.82
Zm00001d025825_P001	Maize	mitochondrion	51.41	46.73
TraesCS4D01G339200.1	Wheat	mitochondrion	51.56	46.68
TraesCS4B01G344100.1	Wheat	mitochondrion	51.25	46.39
HORVU4Hr1G084340.1	Barley	mitochondrion	50.94	46.11
CDY67781	Canola	cytosol	37.97	45.94
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	38.59	45.83
AT1G08050.1	Thale cress	plastid	45.31	45.24
CDY32819	Canola	cytosol	42.66	45.2
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	42.81	44.84
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	47.19	44.28
CDX93597	Canola	cytosol	42.97	42.77
CDX95099	Canola	cytosol	37.03	42.17
GSMUA_Achr9P22360_001	Banana	plastid	14.22	22.47
GSMUA_Achr5P14740_001	Banana	mitochondrion	23.59	21.82
GSMUA_Achr7P01890_001	Banana	mitochondrion	23.75	21.29
GSMUA_Achr4P22090_001	Banana	nucleus	23.59	21.12
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	23.28	20.36
Bra018663.1-P	Field mustard	nucleus	41.88	20.32
GSMUA_Achr4P06340_001	Banana	mitochondrion	5.78	19.27

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EnsemblPlantsGene:GSMUA_Achr1G03470_001	EnsemblPlants:GSMUA_Achr1P03470_001	EnsemblPlants:GSMUA_Achr1T03470_001
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M0RWQ5	PFAM:PF00092
PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000296A94A	InterPro:VWF_A
InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

Putative Uncharacterized protein sll0103 [Source:GMGC_GENE;Acc:GSMUA_Achr1G03470_001]

Coordinates

chr1:-:2829847..2835159

Molecular Weight (calculated)

69528.3 Da

IEP (calculated)

7.359

GRAVY (calculated)

-0.235

Length

640 amino acids

Sequence
(BLAST)

001: MGSLWRKAKS ALGFNLTVDG PTASGAAFSE ASSPGGSVRM LKTPMPTPTP SSSSRWLFRS GSRSSKKTCT ICLGAMKAGP GHALFTAECS HTFHFHCITS
101: NVKYGNYICP ICRAKWKEIP FRAPVSSEHS HGSERANLVN QSQEDPLNVQ SETAETAQQG CTRTVEIKLY PEFSSIPQSA SQENFTVLIH LEAPRACRNQ
201: NVGSATSQTS RAPVDLITVI DVSGSMAGTK LALLKRAMSF VIQNLGPLDR LSVIAFSSTA RRLFHLQRMT DTGRQQALQA VNSLISCGGT NIAEGLWKGA
301: KVIKERTEQN PVCSMILLSD GQDTYTLTSS LSRSFQSHPD YRSLVPSSIL GDIAQQIPVH AFGFGADHDS TVMHSISEIS GGTFSFIESE VEIQDAFAQC
401: IGGLLSVVVK EMLVVAESGH PGVQLAAVKS GNYTNKLADD ARSASITVGD LYADEDRNFL VSVNVPPSSG SHDMVLLKVC CAYRDVICNE SITLEDVVRI
501: QRPEVTTAYT SSVDVDRERN LSILEDQRRK LFESLAGQSG DQLCLALDAE LREMQERMAT QQRYEVSGRA YLLSGLSSHS WQRATARGDS TDLTSLVHAY
601: QTPSMVEMLH RSQTFSPSPR TPTPPAQPAR SFSFLGPQPR

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.