Factsheet for GSMUA_Achr5P20480_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	77.44	78.56
GSMUA_Achr11P...	Banana	mitochondrion	59.31	69.89
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	63.88	63.28
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	64.35	55.97
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	62.3	55.63
CDY31517	Canola	extracellular, mitochondrion, plastid	50.79	53.85
OQU85324	Sorghum	mitochondrion	59.62	53.77
Zm00001d017247_P002	Maize	mitochondrion	58.83	53.59
TraesCS6D01G207700.2	Wheat	mitochondrion	59.78	53.38
TraesCS6B01G254400.1	Wheat	mitochondrion	59.78	53.38
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	59.78	53.23
TraesCS6A01G227300.1	Wheat	mitochondrion	59.62	53.16
CDY52708	Canola	extracellular, mitochondrion, plastid	50.47	53.16
PGSC0003DMT400059986	Potato	nucleus	60.73	52.96
Zm00001d051119_P001	Maize	nucleus	57.41	52.91
Os02t0619600-01	Rice	mitochondrion	59.15	52.89
GSMUA_Achr6P36520_001	Banana	plastid	58.04	52.65
Solyc05g056140.2.1	Tomato	nucleus	60.09	52.34
PGSC0003DMT400020896	Potato	mitochondrion, plastid	60.09	51.98
Solyc11g069600.1.1	Tomato	plastid	59.94	51.84
TraesCS2D01G361900.1	Wheat	mitochondrion	56.31	51.59
TraesCS2B01G382300.1	Wheat	mitochondrion	56.47	51.51
Bra005066.1-P	Field mustard	mitochondrion	53.15	51.37
CDX91506	Canola	mitochondrion	49.05	51.15
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	56.15	51.15
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	56.31	51.0
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	56.47	50.85
CDX74871	Canola	mitochondrion	48.9	50.82
Os04t0508800-01	Rice	plasma membrane	56.47	50.56
Bra020234.1-P	Field mustard	mitochondrion	54.73	49.93
GSMUA_Achr2P11780_001	Banana	golgi	37.07	49.79
Bra002456.1-P	Field mustard	mitochondrion, plastid	54.73	49.57
AT2G38970.1	Thale cress	mitochondrion	53.79	49.28
OQU81931	Sorghum	mitochondrion	54.1	49.21
OQU93256	Sorghum	mitochondrion	53.94	49.0
Os03t0142500-01	Rice	plasma membrane	53.0	48.41
Zm00001d027622_P001	Maize	mitochondrion	52.84	48.41
TraesCS5A01G512800.2	Wheat	mitochondrion	53.79	48.23
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	40.85	48.05
Zm00001d025825_P001	Maize	mitochondrion	53.31	48.01
TraesCS4D01G339200.1	Wheat	mitochondrion	53.47	47.95
CDY67781	Canola	cytosol	39.75	47.64
TraesCS4B01G344100.1	Wheat	mitochondrion	53.0	47.52
HORVU4Hr1G084340.1	Barley	mitochondrion	53.0	47.52
AT1G08050.1	Thale cress	plastid	47.95	47.43
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	50.16	46.63
CDY32819	Canola	cytosol	44.32	46.52
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	44.48	46.15
CDX93597	Canola	cytosol	44.64	44.01
CDX95099	Canola	cytosol	38.33	43.24
GSMUA_Achr4P22090_001	Banana	nucleus	27.44	24.34
GSMUA_Achr5P14740_001	Banana	mitochondrion	25.87	23.7
GSMUA_Achr7P01890_001	Banana	mitochondrion	26.34	23.39
GSMUA_Achr9P22360_001	Banana	plastid	14.67	22.96
GSMUA_Achr4P06340_001	Banana	mitochondrion	6.94	22.92
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	25.55	22.13
Bra018663.1-P	Field mustard	nucleus	44.48	21.38

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EnsemblPlantsGene:GSMUA_Achr5G20480_001	EnsemblPlants:GSMUA_Achr5P20480_001	EnsemblPlants:GSMUA_Achr5T20480_001
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M0T077	PFAM:PF00092
PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000295C187	InterPro:VWF_A
InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G20480_001]

Coordinates

chr5:+:22257736..22262112

Molecular Weight (calculated)

68259.0 Da

IEP (calculated)

7.869

GRAVY (calculated)

-0.218

Length

634 amino acids

Sequence
(BLAST)

001: MGSLWRKAKK AMGLNLCVHV PSAMGDDGFP SGGPAAGWRV SDAAATATSS PAGSVGASEF QALMPSTPTL SQGSLRVSKS GSRSSKKICA ICLGSMKAGH
101: GHALFTAECS HTFHFHCITS NVKHGNYVCP LCKATWKEIP FKASLPSEHP HGRARVNPVK PENFNDDEPL DLLSETVRNS QQNCPKIVEV KTYPEFSAIS
201: QSALVENFAV LVHLKAPHAS MKQNPSRNHN ASSTVSQNSR APIDLVTVLD VSGSMAGTKL ALLKRAMSFV IQNLGPSDRL SVIAFSSAAR RLFHLRRMSD
301: TGRQQALQAV NSLVSSGGTN IAEGLRKGVK VIEERKEKNP VCSIILLSDG QDTYTFPSSA TGAQHSQLDY KSLVPPSIIS GTAIPVHAFG FGADHDSAAM
401: HSISEVSGGT FSFIESEIVI QDAFAQCIGG LLSVVVQEMQ LDVECVHPGV QLASIKSGSY RNQLLNDART GLIEVGDLYA DEERDFLVSV NVPCAKEEII
501: LLKVACVYRD PISKDTVDRE RNRIESAEAM SDARAAAERG DLSDAVSILE QRRMILSEYE ASGRAYVLSG LSSHSWQRAT TRGDSTDSAS LVHAYQTPTM
601: VYMLNRSQTM CPSPRHPAPP IQHTRSFPSQ PQSN

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.