Factsheet for Solyc05g056140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059986	Potato	nucleus	98.08	98.21
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	70.05	71.83
Bra005066.1-P	Field mustard	mitochondrion	57.97	64.33
CDX74871	Canola	mitochondrion	53.85	64.26
CDX91506	Canola	mitochondrion	53.57	64.14
AT2G38970.1	Thale cress	mitochondrion	60.58	63.73
GSMUA_Achr5P20480_001	Banana	mitochondrion	52.34	60.09
Solyc11g069600.1.1	Tomato	plastid	59.89	59.48
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	55.49	59.24
GSMUA_Achr11P...	Banana	mitochondrion	49.73	57.92
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	49.73	56.56
GSMUA_Achr11P...	Banana	mitochondrion	40.52	54.83
Zm00001d017247_P002	Maize	mitochondrion	51.92	54.31
OQU85324	Sorghum	mitochondrion	52.2	54.05
TraesCS2D01G361900.1	Wheat	mitochondrion	50.82	53.47
TraesCS2B01G382300.1	Wheat	mitochondrion	50.96	53.38
Zm00001d051119_P001	Maize	nucleus	50.41	53.34
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	50.82	53.16
Os02t0619600-01	Rice	mitochondrion	51.51	52.89
TraesCS6D01G207700.2	Wheat	mitochondrion	51.37	52.68
TraesCS6B01G254400.1	Wheat	mitochondrion	51.37	52.68
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	51.51	52.67
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	50.41	52.43
TraesCS6A01G227300.1	Wheat	mitochondrion	51.1	52.32
OQU81931	Sorghum	mitochondrion	49.45	51.65
Os04t0508800-01	Rice	plasma membrane	50.14	51.55
Zm00001d027622_P001	Maize	mitochondrion	47.53	50.0
Zm00001d025825_P001	Maize	mitochondrion	48.21	49.86
OQU93256	Sorghum	mitochondrion	47.8	49.86
Os03t0142500-01	Rice	plasma membrane	46.98	49.28
TraesCS4B01G344100.1	Wheat	mitochondrion	47.66	49.08
TraesCS5A01G512800.2	Wheat	mitochondrion	47.66	49.08
TraesCS4D01G339200.1	Wheat	mitochondrion	47.12	48.51
HORVU4Hr1G084340.1	Barley	mitochondrion	46.98	48.37
GSMUA_Achr2P11780_001	Banana	golgi	30.77	47.46
Solyc02g069470.2.1	Tomato	plastid	44.64	45.9
Solyc02g032340.1.1	Tomato	mitochondrion	9.07	39.29
Solyc02g032370.1.1	Tomato	endoplasmic reticulum, extracellular	6.18	38.79
Solyc02g032430.1.1	Tomato	plasma membrane	7.97	34.94
Solyc04g076860.2.1	Tomato	nucleus	29.67	28.8
Solyc02g091710.2.1	Tomato	plastid	27.75	28.13
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	17.72	24.25

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	ncoils:Coil	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	UniProt:K4C2T8	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123
PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF71	SMART:SM00184	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc05g056140.2	EnsemblPlants:Solyc05g056140.2.1	UniParc:UPI00027656F7	InterPro:VWF_A
InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

No Description!

Coordinates

chr5:-:65534208..65539020

Molecular Weight (calculated)

78784.5 Da

IEP (calculated)

8.324

GRAVY (calculated)

-0.322

Length

728 amino acids

Sequence
(BLAST)

001: MVSKWGKVKL ALGLNLCTYV PKKTLDENDD SGSSTVSESE RHSGAALITP ATADWDVAPA TPRSQVLKLS KSLSRSSKKT CSICLASMKR GDGHAIFTAE
101: CSHSFHFQCI ASNVKHGNQV CPVCRAEWKE IPLQFPSLDP PIGRARVNPV DWPQNNALMT VIRRLPTTRP TPNRHISPLF QAPEPAIFDD DDESLGHQLN
201: STEKSASDKS SIDGCESCDN RKVKIETYPE VPAVSRSSAS ANFTVLVQLK APGSFSVQEP GKTQVNLSQV SQTPRAPVDL VTVLDISGSM AGTKLALLKR
301: AMGFVIQNLG PNDRLAVIAF SSTARRLFPL RRMSETGRQQ ALQAVNSLVA NGGTNIAEGL RKGAKIMEDR KEKNSVTSII LLSDGQDTYT VSNNSGSRQQ
401: QPNYKLLLPL SIHGGNSSGF KIPVHAFGFG NDHDASSMHS ISEISGGTFS FIETEGVIQD AFAQCIGGLL SVVVKELQVS IECLHPGVCL SSLKAGSYPN
501: RLMSDGHMGT IDVGDLYADE ERDFLVSINI PTESSGAETS LLKVKCVYVD PFTKEKVSIR SEDLSIKRPE KAGQESVLIE VDRQQNRVRV AEAMAQARAA
601: AEKGDLVGAT SILENSRKLL SESQSAKSHD RLCVALDAEL KEMQERMASR NVYEASGRAY ILSGLSSHSW QRATARGDST GGSSLVQAYQ TPSMAEMVTR
701: SQATLLSSPS AQRHVRPVWS FASQPKPR

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.