Factsheet for HORVU6Hr1G057680.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G207700.2	Wheat	mitochondrion	96.91	97.18
TraesCS6B01G254400.1	Wheat	mitochondrion	96.77	97.04
TraesCS6A01G227300.1	Wheat	mitochondrion	96.21	96.34
OQU85324	Sorghum	mitochondrion	83.99	85.06
Zm00001d017247_P002	Maize	mitochondrion	83.01	84.91
Os02t0619600-01	Rice	mitochondrion	84.41	84.77
Zm00001d051119_P001	Maize	nucleus	79.35	82.12
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	70.37	71.57
GSMUA_Achr5P20480_001	Banana	mitochondrion	53.23	59.78
GSMUA_Achr11P...	Banana	mitochondrion	51.4	58.56
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	51.26	57.03
HORVU4Hr1G086310.1	Barley	cytosol	19.24	55.69
HORVU4Hr1G084370.1	Barley	cytosol	13.48	55.17
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	54.07	54.23
CDY31517	Canola	extracellular, mitochondrion, plastid	44.8	53.34
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	54.35	53.09
CDY52708	Canola	extracellular, mitochondrion, plastid	44.38	52.49
Bra005066.1-P	Field mustard	mitochondrion	47.89	51.98
PGSC0003DMT400059986	Potato	nucleus	52.95	51.86
Solyc05g056140.2.1	Tomato	nucleus	52.67	51.51
GSMUA_Achr11P...	Banana	mitochondrion	38.76	51.3
CDX91506	Canola	mitochondrion	43.68	51.15
CDX74871	Canola	mitochondrion	43.82	51.15
Bra020234.1-P	Field mustard	mitochondrion	49.86	51.08
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	50.28	50.85
HORVU6Hr1G088580.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	52.95	50.81
PGSC0003DMT400020896	Potato	mitochondrion, plastid	51.54	50.07
AT2G38970.1	Thale cress	mitochondrion	48.6	50.0
Solyc11g069600.1.1	Tomato	plastid	51.4	49.93
Bra002456.1-P	Field mustard	mitochondrion, plastid	48.74	49.57
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	37.5	49.54
HORVU4Hr1G084340.1	Barley	mitochondrion	49.02	49.36
CDY67781	Canola	cytosol	36.52	49.15
CDY32819	Canola	cytosol	40.73	48.01
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	40.59	47.3
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	44.38	46.33
AT1G08050.1	Thale cress	plastid	41.71	46.33
CDX93597	Canola	cytosol	39.75	44.01
GSMUA_Achr2P11780_001	Banana	golgi	29.07	43.86
CDX95099	Canola	cytosol	34.27	43.42
HORVU1Hr1G038870.1	Barley	plastid	38.34	42.72
HORVU5Hr1G076190.1	Barley	cytosol, peroxisome	31.04	42.58
HORVU1Hr1G092690.1	Barley	cytosol	32.3	41.14
HORVU4Hr1G084330.1	Barley	cytosol	41.01	38.62
HORVU0Hr1G005150.3	Barley	cytosol, vacuole	39.61	38.42
HORVU4Hr1G084380.2	Barley	cytosol	22.61	28.6
HORVU5Hr1G001270.2	Barley	cytosol	14.04	27.86
HORVU7Hr1G001030.5	Barley	cytosol	20.08	27.24
HORVU4Hr1G001800.2	Barley	cytosol	17.28	26.68
HORVU5Hr1G070100.1	Barley	cytosol	19.66	26.67
HORVU5Hr1G001450.1	Barley	cytosol	19.66	26.67
HORVU0Hr1G036570.1	Barley	mitochondrion	13.34	24.87
Bra018663.1-P	Field mustard	nucleus	39.19	21.15
HORVU7Hr1G098290.1	Barley	cytosol, peroxisome, plasma membrane	18.12	17.92
HORVU2Hr1G118990.1	Barley	cytosol	21.63	16.78
HORVU0Hr1G022100.1	Barley	cytosol	8.29	8.21

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	UniProt:A0A287UA43	EnsemblPlantsGene:HORVU6Hr1G057680	EnsemblPlants:HORVU6Hr1G057680.2
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624
PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF49	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000B4843CA	InterPro:VWF_A	InterPro:Vwaint_dom
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chrchr6H:+:375202028..375208016

Molecular Weight (calculated)

77414.2 Da

IEP (calculated)

8.521

GRAVY (calculated)

-0.271

Length

712 amino acids

Sequence
(BLAST)

001: MEGMWRKAKR AMGIGLCAHL PAVAGDREDC ASERRASDAF SQDSAALAAA AAHASAPNTP AQAEAAGALL RRSKSGAKSS KKTCAICFDS MKPGHGQALF
101: TAECSHMFHF HCISSSVKHG NYVCPVCRAK WKEIPFNRSL SSIVPRGRSG LNVNQARLPQ QDAYMALLRQ VPTRQREAPA LHTSEPVEFN DDEPLQLTTA
201: AGNCDVRSSR TVEIKTYSEF SAIPQSSSQD DFAVLIHLKA PCANPEQITS RPVNATSVGY PTSRAPVDLV TLLDVSGSMA GTKLALLKRA MGFVIQHLGP
301: SDRLSVIAFS STARRLFHLR RMSHSGRQQA LQAVNSLGAG GGTNIADALK KAAKVIEDRS YKNPVCSIIL LSDGQDTYNI SSNVRGTRPD YRSLVPSSIL
401: NHAVGIVPVH GFGFGADHDS DALHSIAEVS GGTFSFIEDE GVIQDAFAQC IGGLLSVVVQ DMRLTVQCVH TGVQLRSIKS GSYLSKVAGD GRNGSIDVGH
501: LYADEERDFL LSVSFPQSRE QTILLKVAFS YRDPVTNECI KVQGNEVMIL RPKSCAPEPV CMEVDREKNR VRAADCIEAA RAAAERGVLS EAVAILEECR
601: RVLSESFSSR NGDRLCMALD AELREMQERM ASRQRYEASG RAYLLSGLSS HSWQRATTRG DSMDSSSLVY SYQTPSMVQM LQRSQNHCPS PQIPRPQIIV
701: PTRSFMQKPQ PR

Best Arabidopsis Sequence Match ( AT3G54780.1 )
(BLAST)

001: MVSKWKKMKL ALSLNLCNYL PRTLEEEPPS LALNSAETLS DAALLSPLNW PMTPTPSSYR RRLSRSSSKS SKTCSICLNK MKEGCGHAIF TAECSHMFHF
101: HCIASNVKHG NQVCPVCRAK WKEIPIQKPS LDLPYYPFDR CNNDAAISLF RCLPPSQRAI TQGHPEPATF DDDERLEEQI VFDGETEVLK KENRDYVRMM
201: DMKVYPEVSA VPQSKSCENF DVLVHLKAVT GDQISQYRRA PIDLVTVLDI SGSMGGTKLA LLKRAMGFVI QNLGSSDRLS VIAFSSTARR LFPLTRMSDA
301: GRQLALQAVN SLVANGGTNI VDGLRKGAKV MEDRLERNSV ASIILLSDGR DTYTTNHPDP SYKVMLPQIS VHSFGFGSDH DASVMHSVSE VSGGTFSFIE
401: SESVIQDALA QCIGGLLSVA VQELRVEIEG VSPNVRLSSI KAGSYSSLVT GDGHSGLVDL GDLYADEERD FLVSINIPVE EDGHTPLLKL RCLYINPLTK
501: EITTLESHVL QIRRPEYVAE EKVVPIEVVR QRNRFLAAEA MAQARTLAEH GDLEAAVKAI ENFRLVLAET VAAKSCDRFC VALDSELKEM QGRMRSSHMY
601: EASGRAYILS GLSSHSWQRA TARGNSRDSS SFVQAYQTPS MAEMLRRSQA MFLVSPSHHR LIQPLLSFAS QPKPR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN98]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.