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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • mitochondrion 7
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra005066.1-P Field mustard mitochondrion 82.8 87.35
CDX74871 Canola mitochondrion 76.88 87.21
CDX91506 Canola mitochondrion 76.45 87.01
AT3G54780.4 Thale cress endoplasmic reticulum, extracellular, plastid 68.93 69.94
VIT_13s0019g04440.t01 Wine grape endoplasmic reticulum 67.05 65.35
PGSC0003DMT400059986 Potato nucleus 64.16 61.07
Solyc05g056140.2.1 Tomato nucleus 63.73 60.58
AT5G60710.1 Thale cress extracellular, mitochondrion, plastid 55.78 54.83
GSMUA_Achr5P20480_001 Banana mitochondrion 49.28 53.79
GSMUA_Achr11P... Banana mitochondrion 47.98 53.12
GSMUA_Achr1P03470_001 Banana mitochondrion, plastid 48.84 52.81
GSMUA_Achr11P... Banana mitochondrion 39.16 50.37
TraesCS2D01G361900.1 Wheat mitochondrion 50.29 50.29
TraesCS2B01G382300.1 Wheat mitochondrion 50.29 50.07
AT1G08050.1 Thale cress plastid 46.24 49.92
Zm00001d017247_P002 Maize mitochondrion 50.0 49.71
TraesCS2A01G364100.2 Wheat cytosol, mitochondrion 50.0 49.71
HORVU2Hr1G088110.4 Barley cytosol, mitochondrion 49.57 49.0
Zm00001d051119_P001 Maize nucleus 48.7 48.98
Os02t0619600-01 Rice mitochondrion 50.14 48.94
TraesCS6D01G207700.2 Wheat mitochondrion 50.0 48.73
TraesCS6B01G254400.1 Wheat mitochondrion 50.0 48.73
HORVU6Hr1G057680.2 Barley cytosol, mitochondrion, nucleus 50.0 48.6
TraesCS6A01G227300.1 Wheat mitochondrion 49.71 48.38
OQU85324 Sorghum mitochondrion 48.99 48.22
Os04t0508800-01 Rice plasma membrane 48.99 47.88
OQU81931 Sorghum mitochondrion 48.12 47.78
Zm00001d025825_P001 Maize mitochondrion 47.98 47.16
OQU93256 Sorghum mitochondrion 46.97 46.56
Zm00001d027622_P001 Maize mitochondrion 46.24 46.24
Os03t0142500-01 Rice plasma membrane 46.1 45.97
TraesCS4B01G344100.1 Wheat mitochondrion 46.24 45.26
TraesCS4D01G339200.1 Wheat mitochondrion 45.66 44.7
TraesCS5A01G512800.2 Wheat mitochondrion 45.66 44.7
HORVU4Hr1G084340.1 Barley mitochondrion 45.38 44.41
GSMUA_Achr2P11780_001 Banana golgi 29.05 42.58
AT5G49665.1 Thale cress plastid 27.89 26.08
AT2G22680.1 Thale cress cytosol, peroxisome, plastid 23.55 23.87
AT5G65683.1 Thale cress peroxisome, plastid 23.55 22.73
AT4G37890.1 Thale cress nucleus 23.27 21.79
Protein Annotations
Gene3D:3.30.40.10Gene3D:3.40.50.410MapMan:35.1EntrezGene:818482ProteinID:AEC09620.1ArrayExpress:AT2G38970
EnsemblPlantsGene:AT2G38970RefSeq:AT2G38970TAIR:AT2G38970RefSeq:AT2G38970-TAIR-GEnsemblPlants:AT2G38970.1TAIR:AT2G38970.1
Unigene:At.37223UniProt:F4IU12InterPro:IPR001841InterPro:IPR002035InterPro:IPR013083InterPro:IPR036465
RefSeq:NP_850306.1PFAM:PF00092PFAM:PF13639PFAM:PF14624PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS50089PFscan:PS50234
PANTHER:PTHR10579PANTHER:PTHR10579:SF71SMART:SM00184SMART:SM00327SUPFAM:SSF53300SUPFAM:SSF57850
SignalP:SignalP-noTMUniParc:UPI00001623EAInterPro:VWF_AInterPro:Vwaint_domInterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHD
SEG:segInterPro:vWFA_dom_sf::::
Description
Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
Coordinates
chr2:+:16273897..16276872
Molecular Weight (calculated)
76355.5 Da
IEP (calculated)
8.475
GRAVY (calculated)
-0.286
Length
692 amino acids
Sequence
(BLAST)
001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.