CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017247_P002	Maize	mitochondrion	93.6	94.54
Zm00001d051119_P001	Maize	nucleus	90.04	92.01
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	85.06	83.99
TraesCS6D01G207700.2	Wheat	mitochondrion	84.78	83.94
TraesCS6B01G254400.1	Wheat	mitochondrion	84.5	83.66
TraesCS6A01G227300.1	Wheat	mitochondrion	84.35	83.4
Os02t0619600-01	Rice	mitochondrion	82.65	81.95
OQU81931	Sorghum	mitochondrion	66.57	67.14
GSMUA_Achr5P20480_001	Banana	mitochondrion	53.77	59.62
GSMUA_Achr11P...	Banana	mitochondrion	52.49	59.04
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	52.35	57.5
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	55.05	54.51
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	55.9	53.91
CDY31517	Canola	extracellular, mitochondrion, plastid	44.95	52.84
PGSC0003DMT400059986	Potato	nucleus	54.2	52.41
GSMUA_Achr11P...	Banana	mitochondrion	39.97	52.23
Solyc05g056140.2.1	Tomato	nucleus	54.05	52.2
CDY52708	Canola	extracellular, mitochondrion, plastid	44.38	51.83
OQU93256	Sorghum	mitochondrion	51.35	51.72
OQU85917	Sorghum	nucleus	54.2	51.7
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	50.78	50.71
Bra020234.1-P	Field mustard	mitochondrion	50.07	50.65
Bra005066.1-P	Field mustard	mitochondrion	47.23	50.61
CDX91506	Canola	mitochondrion	43.24	50.0
CDX74871	Canola	mitochondrion	43.39	50.0
PGSC0003DMT400020896	Potato	mitochondrion, plastid	51.92	49.8
Solyc11g069600.1.1	Tomato	plastid	51.78	49.66
Bra002456.1-P	Field mustard	mitochondrion, plastid	48.93	49.14
AT2G38970.1	Thale cress	mitochondrion	48.22	48.99
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	37.41	48.79
CDY67781	Canola	cytosol	36.13	48.02
EER91513	Sorghum	mitochondrion	47.94	47.87
CDY32819	Canola	cytosol	40.54	47.19
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	40.83	46.97
AT1G08050.1	Thale cress	plastid	42.39	46.49
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	44.81	46.19
EER91508	Sorghum	cytosol, plastid	42.25	45.9
GSMUA_Achr2P11780_001	Banana	golgi	29.73	44.28
EER91509	Sorghum	nucleus	36.56	44.01
CDX93597	Canola	cytosol	40.11	43.86
EER95529	Sorghum	nucleus	40.4	43.69
CDX95099	Canola	cytosol	34.57	43.24
OQU93258	Sorghum	cytosol	41.39	41.45
OQU79988	Sorghum	cytosol	31.29	40.67
OQU90497	Sorghum	cytosol	29.45	40.19
OQU91675	Sorghum	cytosol	35.14	39.71
EES11757	Sorghum	cytosol	21.34	28.9
EES05180	Sorghum	mitochondrion	13.51	25.75
KXG38506	Sorghum	cytosol	12.09	25.15
EES10354	Sorghum	plastid	16.93	25.0
KXG20893	Sorghum	cytosol, plastid	20.2	23.24
KXG25767	Sorghum	mitochondrion	15.36	23.08
EER87790	Sorghum	endoplasmic reticulum, extracellular	19.63	21.7
OQU75754	Sorghum	mitochondrion, plastid	18.92	21.49
Bra018663.1-P	Field mustard	nucleus	39.83	21.23
OQU89212	Sorghum	cytosol	16.79	21.11
OQU81040	Sorghum	peroxisome	20.63	20.28

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EntrezGene:8072483	UniProt:A0A1Z5RNM0	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	EnsemblPlants:OQU85324	ProteinID:OQU85324	ProteinID:OQU85324.1
PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579
PANTHER:PTHR10579:SF49	SMART:SM00184	SMART:SM00327	EnsemblPlantsGene:SORBI_3004G217450	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI0001A85F39	InterPro:VWF_A	InterPro:Vwaint_dom	RefSeq:XP_002454183.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:56680644..56685198

Molecular Weight (calculated)

76314.6 Da

IEP (calculated)

8.403

GRAVY (calculated)

-0.303

Length

703 amino acids

Sequence
(BLAST)

001: MEGVWRKAKR ALGASLCVHL PAVASDREDG GASERRASDA LSSIDSAAAA HASAPTTPAA PEAAAALLRR SKSGGKSSKR MCAICFDSMK PGHGQALFTA
101: ECSHMFHFHC ISSSVKHGNH VCPVCRAKWK EIPFNRSLSS IVPRGRGGVN VNQVRLPQQD GYMALLRQVP NRQREGPVLV TSEPADFNDD EPLQKMEAAN
201: IGSSRTVEIK TYSEFSAIQQ SSQDDFAVLI HLKAPYANPE QVTGRSVSAT SVGYPTSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ HLGPSDRLSV
301: IAFSSTARRL FHLRRMSHSG RQQALQAVNS LGASGGTNIA DALKKAAKVI EDRSHQNPVC SIILLSDGQD TYNIPSNIRG ARPDYSSLVP SSILNHTFRL
401: VPVHGFGFGV DHDSDALHSI AEASGGTFSF IEDEGVIQDA FAQCIGGLLS VVVQNMQVNV ECVHPGVQLR CIKSGSYLSK VAAHGRNGSI DVGHLYADEE
501: RDFLLSVSLP HCREKTTLLK VACAYRDSLT NEDIKIQGDE VTVLRPKSPI SEPVCMEVDR ERNRVRAADA IEAARAAAER GALSDAVSIL EDCRRILSES
601: FSSRSRDRLC MALDAELREM QERMANRQRY EASGRAYLLS GLSSHSWQRA TARGDSTDSD TLVYSYQTPS MVHMLQRSQN HCPSPQGPSQ VQQPRILVKP
701: QPR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.