CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032753_P001	Maize	cytosol	88.1	88.78
TraesCS1B01G164800.1	Wheat	cytosol, nucleus, peroxisome	63.99	65.09
HORVU1Hr1G038870.1	Barley	plastid	63.68	64.48
TraesCS1D01G144900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome, plastid	64.3	60.91
EER95529	Sorghum	nucleus	52.09	51.85
OQU90497	Sorghum	cytosol	41.27	51.84
EER91509	Sorghum	nucleus	46.21	51.2
OQU93258	Sorghum	cytosol	54.4	50.14
OQU79988	Sorghum	cytosol	41.89	50.09
OQU91675	Sorghum	cytosol	45.9	47.75
OQU85324	Sorghum	mitochondrion	45.9	42.25
OQU81931	Sorghum	mitochondrion	43.12	40.03
OQU93256	Sorghum	mitochondrion	42.97	39.83
EER91513	Sorghum	mitochondrion	39.41	36.22
OQU85917	Sorghum	nucleus	39.88	35.01
EES11757	Sorghum	cytosol	22.26	27.75
EES10354	Sorghum	plastid	18.39	25.0
EER87790	Sorghum	endoplasmic reticulum, extracellular	23.96	24.37
EES05180	Sorghum	mitochondrion	13.76	24.12
KXG38506	Sorghum	cytosol	12.36	23.67
KXG20893	Sorghum	cytosol, plastid	21.64	22.91
KXG25767	Sorghum	mitochondrion	16.54	22.86
OQU75754	Sorghum	mitochondrion, plastid	18.86	19.71
OQU89212	Sorghum	cytosol	16.85	19.5
OQU81040	Sorghum	peroxisome	19.01	17.2

Protein Annotations

Gene3D:3.40.50.410	MapMan:35.1	EntrezGene:8070507	UniProt:C5WZD8	EnsemblPlants:EER91508	ProteinID:EER91508
ProteinID:EER91508.1	InterPro:IPR002035	InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF72	SMART:SM00327	EnsemblPlantsGene:SORBI_3001G226800	SUPFAM:SSF53300	unigene:Sbi.19114
UniParc:UPI0001A82592	InterPro:VWF_A	InterPro:Vwaint_dom	RefSeq:XP_002464510.1	SEG:seg	InterPro:vWFA_dom_sf

Description

hypothetical protein

Coordinates

chr1:+:21715682..21718992

Molecular Weight (calculated)

69358.7 Da

IEP (calculated)

9.025

GRAVY (calculated)

-0.414

Length

647 amino acids

Sequence
(BLAST)

001: MESSPWSNCH GDMRRTRTRS GGGGSGSGHV VFPLQCSHQD QSHSRRVSGS GIVEANGRPV CQLCSARWRE LPSLRSTNPS PPSPVPSSQP FFRPMEPRVF
101: DDDDPVERTP RPLRDDHHRG ASADGGAVAL TTHCECSALA RDASADDFAV LVHARAPGMM AGAGGGAAAA AARAPLDLVT VLDVSGSMVG TKLELLKQAM
201: GFVIDNLGPR DRLCVVSFSS GANRLMRLAR MSDAGKSLAR RAVQSLAAGG GTNIGEALRR AAKVIDERMH RNAVASVVLL SDGQDTYTVP RRGGYGGRDA
301: NYDALVPPSF AFTGAGGRPA APVHTFGFGT DHDAAAMHTI AEATGGTFSF IEDEAAIQDA FAQCIGGLLS VTVQELRLDI ACVHPGVRIR AVKSGSYGSH
401: IDADGRSASV DVGELYADEE RRFLLFLHVP RARPADDDDT HLIRVSCAYR DTATGRSKNV TGEEDAKVRR PWDPDPVTLE RSAEVERERV RVEATDGIAA
501: ARAAAERGAH AEAVEILRQR QRSVRRSAAA RAGDSTCVAL SRELREMRAR VASRRRYELS GRAYVLAGLS SHAQQRAASR QMMSGGAAEE ATRSGESAGE
601: RSVALATAGL TTSYMTPAML DMLGRSRRSR ELLQQRQQQT KERRRTF

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.