Factsheet for TraesCS1B01G164800.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G038870.1	Barley	plastid	95.91	95.46
TraesCS1D01G144900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome, plastid	96.38	89.75
EER91508	Sorghum	cytosol, plastid	65.09	63.99
Zm00001d032753_P001	Maize	cytosol	63.05	62.46
TraesCS1B01G456800.1	Wheat	cytosol	50.94	53.73
TraesCS5B01G284200.1	Wheat	cytosol	42.3	53.69
TraesCS3B01G425600.1	Wheat	cytosol	34.59	53.53
TraesCS5B01G338500.1	Wheat	cytosol	42.77	53.12
TraesCS2B01G515000.1	Wheat	cytosol	40.88	49.24
TraesCS2B01G377900.1	Wheat	cytosol	50.0	49.23
TraesCS4B01G344200.1	Wheat	cytosol	52.67	46.46
TraesCS4B01G358100.1	Wheat	plastid	50.16	44.8
TraesCS2B01G382300.1	Wheat	mitochondrion	42.14	38.56
TraesCS6B01G254400.1	Wheat	mitochondrion	42.92	38.45
TraesCS4B01G344100.1	Wheat	mitochondrion	40.57	36.49
TraesCS6B01G413100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	39.31	33.83
TraesCS5B01G009400.1	Wheat	cytosol	19.97	26.57
TraesCS3B01G577600.1	Wheat	cytosol	20.91	25.38
TraesCS5B01G009600.1	Wheat	cytosol	20.6	24.95
TraesCS2B01G057300.1	Wheat	peroxisome	25.16	20.78
TraesCS5B01G176000.2	Wheat	mitochondrion	17.14	20.68
TraesCS2B01G026900.1	Wheat	cytosol	19.03	20.2
TraesCS7B01G344600.1	Wheat	mitochondrion	10.38	18.8
TraesCS6B01G057500.1	Wheat	cytosol	14.62	18.45
TraesCS7B01G327100.1	Wheat	cytosol, peroxisome, plasma membrane	19.81	17.31
TraesCS5B01G009700.1	Wheat	mitochondrion	22.64	16.76

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF00092	PFAM:PF13639	PFAM:PF14624	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF72	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS1B01G164800	EnsemblPlants:TraesCS1B01G164800.1	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16448	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

No Description!

Coordinates

chr1B:+:287841086..287842996

Molecular Weight (calculated)

67687.8 Da

IEP (calculated)

8.699

GRAVY (calculated)

-0.309

Length

636 amino acids

Sequence
(BLAST)

001: MESNSSTCAI CNGDMRRGGG GGSGFTADCS HQFHYRCVSG SLASSRQACP LCSARCRDLP SFRSSKSSTP SQPPLASRAP AQPFFRPMEP RVFDDDDPVV
101: RAPRPLGDRH HGTASATSSG SLAVALSTHC EYSSLARDAS HENFAVLVHA RAPGTGGAAT GGAPPRARAP IDLVTVLDVS GSMVGSKLAL LKQAMGFVVD
201: SLGPADRLCV VSFSSGASRL MRLARMSESD GGKDLAKRAV QSLAAGGGTN IGAALLKAAK VLDDRLRRNA VASVILLSDG QDTYTVPKRG RDANYDALVP
301: PSFMYTGAGD RSAPVHTFGF GTDHDAAAMH TIAEATGGTF SFIENEADIQ DAFAQCIGGL LSVAVQELRV DIACPQSGVR VRSVNSGHYR SHINVDGRSA
401: SIDVGELYAD EERRFLLLMD VPRARSTTDV THVMQVSCAY RDMMTGRPTN VDGEDAVVLR PSRALSLERS AEVERERVRL AATDGIAAAR AAAERGAHEE
501: AAEILQSGQR AVARSAAARA GDSMCVELSR DLQEMSARVA DRRRYELSGR AYMLAGLSSH AQQRATSRQM SGASETTRRR AEAALGTTVI STTGATASYS
601: YVTPAMMDML DRSRRSREMT ALSQQRSKER RRSAHY

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.