CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
plastid 3
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045454_P001	Maize	plasma membrane	81.92	80.15
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	79.25	79.87
Os11t0687100-01	Rice	nucleus	58.96	59.24
Os06t0578100-00	Rice	nucleus	55.82	53.3
OQU75754	Sorghum	mitochondrion, plastid	38.36	39.42
OQU90497	Sorghum	cytosol	21.07	26.02
OQU79988	Sorghum	cytosol	21.86	25.69
KXG25767	Sorghum	mitochondrion	17.92	24.36
EER91508	Sorghum	cytosol, plastid	24.37	23.96
EER91509	Sorghum	nucleus	21.86	23.8
EES11757	Sorghum	cytosol	19.18	23.51
KXG20893	Sorghum	cytosol, plastid	22.01	22.91
EES10354	Sorghum	plastid	16.98	22.69
EER95529	Sorghum	nucleus	22.64	22.15
OQU93258	Sorghum	cytosol	23.9	21.65
OQU91675	Sorghum	cytosol	20.75	21.22
EES05180	Sorghum	mitochondrion	12.26	21.14
KXG38506	Sorghum	cytosol	11.01	20.71
OQU85324	Sorghum	mitochondrion	21.7	19.63
OQU81931	Sorghum	mitochondrion	21.38	19.51
OQU93256	Sorghum	mitochondrion	21.38	19.48
EER91513	Sorghum	mitochondrion	21.23	19.18
OQU85917	Sorghum	nucleus	22.01	19.0
OQU89212	Sorghum	cytosol	11.95	13.6
OQU81040	Sorghum	peroxisome	12.74	11.33
GSMUA_Achr4P06340_001	Banana	mitochondrion	0.47	1.56

Protein Annotations

EnsemblPlants:EER87790	EnsemblPlantsGene:SORBI_3010G023600	EntrezGene:8069073	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR036465
InterPro:VWF_A	InterPro:vWFA_dom_sf	PANTHER:PTHR10579	PANTHER:PTHR10579:SF57	PFAM:PF13768	PFscan:PS50234
ProteinID:EER87790	ProteinID:EER87790.1	RefSeq:XP_002436423.1	SEG:seg	SignalP:SignalP-noTM	SMART:SM00327
SUPFAM:SSF53300	unigene:Sbi.15752	UniParc:UPI0001A88EFA	UniProt:C5Z3C8	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr10:+:1920170..1922732

Molecular Weight (calculated)

69097.7 Da

IEP (calculated)

6.267

GRAVY (calculated)

-0.036

Length

636 amino acids

Sequence
(BLAST)

001: MQIFQVTTMI LQPRLLTWFF STLLLTQLMM ASTAAAESTV KVSTTPIFPQ IPLGQARKDF QVLLRVEAPT AAVRPEARVP IDVVAVLDVS GSMNDPAAVP
101: PERRPTTSRL DLLKTAAKFM VAKLEDGDRL SIVAFNDRPV KELSSGLLYM SADGRRKAMK SVDQLEARGG TALVPAFEEA VKVLDGRVGD GRNRLGFIVL
201: LTDGEDTSGF TLSERRREVI RGALGRYPVH TLGLGRAHDP EVLLYLAQES HGTYSFVDDD NIGEVAGALA VCLGGLSTVA AVDTRVVLKA DELNGVRIDR
301: VDSGGHDNSV SCGGASCEIS VGVLYAGEAK HFVVHLHVPA AAPSSSSSST DSGHYCDGIG ACDRYYHHRD EQRLLAVGYS YRDHPSSRVI TVQAHGVFVK
401: RSPSPAVLDG GWQAPVPVPS PVVLQHIVRL ELLEVVAGVV HGELITDDRA RAADVLQLKW EEFRACHQFW GGGLDLMSGL EKEVGGMVSS LRAGVAAYVY
501: AWVSSHQMQR ATSIGSPEKA VVEFLTPAMR LVLEEARKLP LWQAGTTAAT TNVQHVGSGV DEFEMVEWRL EVWSKVKQQL MSFQEQTAVD EEQQHLAAVF
601: QEASLEAIDR AMHRDIYLAA VYASKLRRCH SSGATN

Best Arabidopsis Sequence Match ( AT3G54780.1 )
(BLAST)

001: MVSKWKKMKL ALSLNLCNYL PRTLEEEPPS LALNSAETLS DAALLSPLNW PMTPTPSSYR RRLSRSSSKS SKTCSICLNK MKEGCGHAIF TAECSHMFHF
101: HCIASNVKHG NQVCPVCRAK WKEIPIQKPS LDLPYYPFDR CNNDAAISLF RCLPPSQRAI TQGHPEPATF DDDERLEEQI VFDGETEVLK KENRDYVRMM
201: DMKVYPEVSA VPQSKSCENF DVLVHLKAVT GDQISQYRRA PIDLVTVLDI SGSMGGTKLA LLKRAMGFVI QNLGSSDRLS VIAFSSTARR LFPLTRMSDA
301: GRQLALQAVN SLVANGGTNI VDGLRKGAKV MEDRLERNSV ASIILLSDGR DTYTTNHPDP SYKVMLPQIS VHSFGFGSDH DASVMHSVSE VSGGTFSFIE
401: SESVIQDALA QCIGGLLSVA VQELRVEIEG VSPNVRLSSI KAGSYSSLVT GDGHSGLVDL GDLYADEERD FLVSINIPVE EDGHTPLLKL RCLYINPLTK
501: EITTLESHVL QIRRPEYVAE EKVVPIEVVR QRNRFLAAEA MAQARTLAEH GDLEAAVKAI ENFRLVLAET VAAKSCDRFC VALDSELKEM QGRMRSSHMY
601: EASGRAYILS GLSSHSWQRA TARGNSRDSS SFVQAYQTPS MAEMLRRSQA MFLVSPSHHR LIQPLLSFAS QPKPR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN98]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.