Factsheet for Os11t0687100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

nucleus: 24133045

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0578100-00	Rice	nucleus	82.62	78.53
EER87790	Sorghum	endoplasmic reticulum, extracellular	59.24	58.96
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	56.87	57.05
Zm00001d045454_P001	Maize	plasma membrane	58.29	56.77
Os11t0687200-02	Rice	golgi	39.97	42.31
Os06t0578700-01	Rice	golgi	38.39	41.75
Os11t0679000-00	Rice	cytosol	31.28	34.14
Os04t0266700-00	Rice	cytosol	6.0	33.33
Os11t0650600-00	Rice	cytosol	26.22	29.17
Os11t0650500-00	Rice	cytosol	22.27	23.86
Os12t0431700-00	Rice	cytosol	7.74	23.67
Os03t0142500-01	Rice	plasma membrane	24.33	22.19
Os03t0403600-01	Rice	cytosol, extracellular	14.38	21.88
Os08t0126100-00	Rice	nucleus	24.17	21.73
Os02t0619600-01	Rice	mitochondrion	24.01	21.44
Os12t0203500-00	Rice	vacuole	18.17	20.99
Os04t0508800-01	Rice	plasma membrane	23.06	20.62
Os02t0806700-01	Rice	nucleus	22.59	19.78
Os08t0126000-00	Rice	plastid	22.75	19.02
Os01t0640200-00	Rice	cytosol	18.33	18.53
Os10t0464500-00	Rice	extracellular, plasma membrane	11.53	15.02
Os10t0464800-00	Rice	nucleus	22.43	14.96
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	15.96	14.66
Os09t0298500-01	Rice	nucleus	12.01	14.29
GSMUA_Achr4P06340_001	Banana	mitochondrion	0.32	1.04

Protein Annotations

Gene3D:3.40.50.410	MapMan:35.2	EntrezGene:4351146	ProteinID:ABA95364.1	ProteinID:BAF28844.1	ProteinID:BAT15284.1
InterPro:IPR002035	InterPro:IPR036465	EnsemblPlantsGene:Os11g0687100	EnsemblPlants:Os11t0687100-01	PFAM:PF13768	PFAM:PF14624
PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF57	UniProt:Q2QZH3	SMART:SM00327	SUPFAM:SSF53300
SignalP:SignalP-noTM	UniParc:UPI0000681C32	InterPro:VWF_A	InterPro:Vwaint_dom	RefSeq:XP_015615639.1	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

von Willebrand factor, type A domain containing protein. (Os11t0687100-01)

Coordinates

chr11:+:27828727..27835243

Molecular Weight (calculated)

67714.1 Da

IEP (calculated)

6.436

GRAVY (calculated)

-0.012

Length

633 amino acids

Sequence
(BLAST)

001: MGQLHNLMLL LPCLIFSTLL RTEAMSVAPV KVSTTPIFPT IPRGQTNKDF QVLLRVEAPP AADLNSHVPL DVVAVLDVSG SMNDPVAAAS PKSNLQGSRL
101: DVLKASMKFV IRKLADGDRL SIVAFNDGPV KEYSSGLLDV SGDGRSIAGK KIDRLQARGG TALMPALEEA VKILDERQGS SRNHVGFILL LTDGDDTTGF
201: RWTRDAIHGA VFKYPVHTFG LGASHDPEAL LHIAQGSRGT YSFVDDDNLA NIAGALAVCL GGLKTVAAVD TRVSLKAAEL SGGGARIVRV DSGGYESSVA
301: CGGASGEVVV GVLYTGEVKN FVVHLHVPAA SSTTLTFSSV ECGGYYDAAT VCDHCHHRHQ QQLLAVGYSY SHAPGAASAA VSVEGHGVFV ERPEVAAVFV
401: SVDGVGVGGG RQRQIPLPSP VVMQHMVRFE LLELVAGFAE AEMASKPAAT TTQPRAADVL QGKWEEFRRA RQFWGGVELD GVEKEVDAMV ASLRSGLAYV
501: SSWVSSHQMQ RATAMGSPEK VVAEFMTPAM VIIVEEARKL PPPPPPPPAA AEAARERPSG CDGGDDIHHV IRQRLELWSK VRREVPLMYQ PSPEQEDVQL
601: TAVFREASLE AIDRAMHHDI YLAVVHVSNQ RRC

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.