Factsheet for Os09t0298500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G178300.1	Wheat	mitochondrion	88.53	89.37
TraesCS5B01G176000.2	Wheat	mitochondrion	88.16	88.99
Zm00001d020013_P001	Maize	cytosol	84.96	85.93
TraesCS5D01G182800.1	Wheat	cytosol, plastid	88.91	83.27
OQU89212	Sorghum	cytosol	81.58	77.64
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	51.69	53.09
KRH36665	Soybean	nucleus	50.75	49.09
KRH11654	Soybean	nucleus, plastid	50.94	49.01
GSMUA_Achr9P22360_001	Banana	plastid	37.03	48.64
KRH51230	Soybean	nucleus	46.24	47.49
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	47.18	47.18
PGSC0003DMT400070011	Potato	nucleus	46.8	46.98
Bra024913.1-P	Field mustard	mitochondrion	44.92	45.79
CDY17702	Canola	mitochondrion	31.39	43.38
CDX77800	Canola	nucleus	43.8	41.02
Os12t0431700-00	Rice	cytosol	7.89	20.29
Os03t0142500-01	Rice	plasma membrane	25.19	19.31
Os02t0619600-01	Rice	mitochondrion	23.68	17.77
Os04t0508800-01	Rice	plasma membrane	23.31	17.51
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	22.56	17.42
Os02t0806700-01	Rice	nucleus	23.5	17.29
Os04t0266700-00	Rice	cytosol	3.38	15.79
Os12t0203500-00	Rice	vacuole	15.79	15.33
Os08t0126100-00	Rice	nucleus	20.11	15.2
Os10t0464800-00	Rice	nucleus	23.5	13.17
Os08t0126000-00	Rice	plastid	18.23	12.81
Os11t0687100-01	Rice	nucleus	14.29	12.01
Os01t0640200-00	Rice	cytosol	13.16	11.18
Os10t0464500-00	Rice	extracellular, plasma membrane	10.15	11.11
Os06t0578100-00	Rice	nucleus	13.72	10.96
Os11t0650600-00	Rice	cytosol	11.65	10.9
Os03t0403600-01	Rice	cytosol, extracellular	7.89	10.1
Os11t0679000-00	Rice	cytosol	10.9	10.0
Os06t0578700-01	Rice	golgi	10.71	9.79
Os11t0687200-02	Rice	golgi	10.9	9.7
Os11t0650500-00	Rice	cytosol	10.53	9.48

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EntrezGene:4346658	EMBL:AK064311	ProteinID:BAD32989.1
ProteinID:BAF24724.1	ProteinID:BAT07330.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270	InterPro:IPR001841
InterPro:IPR013083	InterPro:IPR036465	EnsemblPlantsGene:Os09g0298500	EnsemblPlants:Os09t0298500-01	PFAM:PF12678	PFscan:PS50089
PANTHER:PTHR10579	PANTHER:PTHR10579:SF47	UniProt:Q69VQ6	SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI00003FF2D3	RefSeq:XP_015610807.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_H2	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0298500-01);Similar to Protein binding protein. (Os09t0298500-02)

Coordinates

chr9:-:7277255..7282211

Molecular Weight (calculated)

58213.7 Da

IEP (calculated)

7.853

GRAVY (calculated)

-0.234

Length

532 amino acids

Sequence
(BLAST)

001: MAGRCAGGGD GGGEGMLARL RRAAARRIGL SCASFFSHAA TSPSPPPKTI SCSALNAPAD STDEDQEKLE EPTSTRMADK NLCAICLEPL STGSVDIDNG
101: DRPAIFTSQC SHSFHFLCIA SNIRHGNVTC PICRAQWSQL PRDLKVPPLL QNNQSDPILR ILDDNIATSR FNRRSSIRAA RYNDDDPVEP YTLTEHVDPC
201: LRFALIPSPV AAHHHALGHY PCGRVMPLQQ HCQYSSSSML SPPQIASPSG QRRAYLSVSL APQPAMDLVL VASPNGPHLR LLKQAMALAV FSMRAIDRLA
301: IVTNATTATR AFPLRRMSSH GKRMALQVIE HLCCVGGTDP VGALQKGLKI LEDRAHQNPS SCILHLSDHP IRSCFGVDMN RFNIPVHQFH VGLGFGVQNG
401: FVMHEFEELL ARLLGGVISD TQLRIGEHGG VVRLGELRGG EERRIPLDLV SDCGFILVGY SYLEGGREDQ FRTGEVAVGF EEKGDNRYCG VRDAGGLSIG
501: GERRSSCCAE RWDYLDPFMA RRWAKHFNVY RA

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.