Factsheet for Zm00001d020013_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0298500-01	Rice	nucleus	85.93	84.96
TraesCS5A01G178300.1	Wheat	mitochondrion	84.22	84.06
TraesCS5B01G176000.2	Wheat	mitochondrion	84.03	83.87
OQU89212	Sorghum	cytosol	87.07	81.93
TraesCS5D01G182800.1	Wheat	cytosol, plastid	84.6	78.35
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	50.76	51.54
KRH36665	Soybean	nucleus	50.76	48.55
KRH11654	Soybean	nucleus, plastid	50.95	48.46
GSMUA_Achr9P22360_001	Banana	plastid	36.69	47.65
KRH51230	Soybean	nucleus	45.63	46.33
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	46.39	45.86
PGSC0003DMT400070011	Potato	nucleus	46.01	45.66
Bra024913.1-P	Field mustard	mitochondrion	43.54	43.87
CDY17702	Canola	mitochondrion	30.99	42.34
CDX77800	Canola	nucleus	43.35	40.14
Zm00001d027622_P001	Maize	mitochondrion	24.71	18.79
Zm00001d051119_P001	Maize	nucleus	22.62	17.3
Zm00001d017247_P002	Maize	mitochondrion	22.62	17.1
Zm00001d032750_P001	Maize	plastid	20.34	17.04
Zm00001d024940_P001	Maize	peroxisome	23.57	16.82
Zm00001d014084_P001	Maize	mitochondrion	22.43	16.79
Zm00001d018428_P001	Maize	mitochondrion	23.19	16.51
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	22.81	16.42
Zm00001d004553_P001	Maize	peroxisome	23.38	16.4
Zm00001d025825_P001	Maize	mitochondrion	21.86	16.34
Zm00001d032753_P001	Maize	cytosol	19.77	16.2
Zm00001d027621_P001	Maize	cytosol	22.43	15.78
Zm00001d024886_P002	Maize	cytosol	14.83	15.12
Zm00001d024014_P001	Maize	cytosol	13.69	14.31
Zm00001d008553_P001	Maize	cytosol	13.5	14.23
Zm00001d007190_P001	Maize	cytosol	13.31	13.97
Zm00001d051773_P001	Maize	plasma membrane	11.79	13.51
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	13.69	11.41
Zm00001d045454_P001	Maize	plasma membrane	13.69	11.08
Zm00001d036068_P001	Maize	mitochondrion, plastid	9.7	9.26
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	11.03	9.21
Zm00001d035428_P001	Maize	mitochondrion	11.6	9.09
Zm00001d036066_P001	Maize	cytosol	9.89	7.82
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	8.75	7.64
Zm00001d035434_P001	Maize	cytosol	6.46	7.41

Protein Annotations

EntrezGene:100191467	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	UniProt:B4F8X0	EMBL:BT033558
EMBL:EU966857	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR036465	ProteinID:ONM54092.1	PFAM:PF12678	PFscan:PS50089	PANTHER:PTHR10579	PANTHER:PTHR10579:SF47
SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI00017B6105	EnsemblPlantsGene:Zm00001d020013	EnsemblPlants:Zm00001d020013_P001
EnsemblPlants:Zm00001d020013_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_H2	SEG:seg	InterPro:vWFA_dom_sf

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr7:-:85541771..85551145

Molecular Weight (calculated)

57412.1 Da

IEP (calculated)

7.987

GRAVY (calculated)

-0.162

Length

526 amino acids

Sequence
(BLAST)

001: MVGGCASGDG AAEGTLARWR RAAAKRIGLS CASFFSYAAS PSPPPSKIIS HSALNAPDGE QQKMEEPTST RVADKNLCAI CLELLSTSIS SDVDSGEAAA
101: IYTAQCSHSF HFLCIASNIR HGNVSCPICR AQWSELPRDL KVPPLLHNQS DPILRILDDN IASSRVNRRS SIRAARYNDD DPVEPFTLAE HVDPCLRFVL
201: IPAPVSAHHH VLGHYPCGRM LPLQQPCQYS GSSMLSPPQI ASPSGQRRAY LSVSLAPQPA MDLVLVASPN GPHLRLLKQA MALVVFSMRA IDRLAIVTNA
301: TTATRAFPLR RMTSHAKRMA LQVIEHLCCV GGTDPVGALH KGLKILEDRA HRNPSNCILH LSDHPVRNCV GGVDMNHSSI PVHQFHVGLG FGVRSGFIMH
401: EFEELLARLL GGVIGDTQLR IGEHGGMVRL GELRGGEERR IPLDLAADCG FILVGYSYLE GGREEQLRTG EIAVGFEEKG DNGYCGMREM GLSIGGERRS
501: CCAERRDYHD PFMARRWAKH FNVYRA

Best Arabidopsis Sequence Match ( AT3G54780.3 )
(BLAST)

001: MVSKWKKMKL ALSLNLCNYL PRTLEEEPPS LALNSAETLS DAALLSPLNW PMTPTPSSYR RRLSRSSSKS SKQTCSICLN KMKEGCGHAI FTAECSHMFH
101: FHCIASNVKH GNQVCPVCRA KWKEIPIQKP SLDLPYYPFD RCNNDAAISL FRCLPPSQRA ITQGHPEPAT FDDDERLEEQ IVFDGETEVL KKENRDYVRM
201: MDMKVYPEVS AVPQSKSCEN FDVLVHLKAV TGDQISQYRR APIDLVTVLD ISGSMGGTKL ALLKRAMGFV IQNLGSSDRL SVIAFSSTAR RLFPLTRMSD
301: AGRQLALQAV NSLVANGGTN IVDGLRKGAK VMEDRLERNS VASIILLSDG RDTYTTNHPD PSYKDALAQC IGGLLSVAVQ ELRVEIEGVS PNVRLSSIKA
401: GSYSSLVTGD GHSGLVDLGD LYADEERDFL VSINIPVEED GHTPLLKLRC LYINPLTKEI TTLESHVLQI RRPEYVAEEK VVPIEVVRQR NRFLAAEAMA
501: QARTLAEHGD LEAAVKAIEN FRLVLAETVA AKSCDRFCVA LDSELKEMQG RMRSSHMYEA SGRAYILSGL SSHSWQRATA RGNSRDSSSF VQAYQTPSMA
601: EMLRRSQAMF LVSPSHHRLI QPLLSFASQP KPR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN98]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.