Factsheet for Zm00001d045456_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75754	Sorghum	mitochondrion, plastid	70.93	68.98
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	69.44	66.35
Zm00001d036068_P001	Maize	mitochondrion, plastid	60.3	65.88
Zm00001d036066_P001	Maize	cytosol	66.28	60.0
Os11t0687200-02	Rice	golgi	40.37	40.64
Os06t0578700-01	Rice	golgi	38.54	39.86
Zm00001d045454_P001	Maize	plasma membrane	34.72	32.15
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	33.55	32.01
Zm00001d008553_P001	Maize	cytosol	18.77	22.65
Zm00001d007190_P001	Maize	cytosol	18.77	22.55
Zm00001d024014_P001	Maize	cytosol	18.44	22.07
Zm00001d035434_P001	Maize	cytosol	16.61	21.79
Zm00001d035428_P001	Maize	mitochondrion	24.25	21.76
Zm00001d024886_P002	Maize	cytosol	18.44	21.51
Zm00001d051773_P001	Maize	plasma membrane	14.78	19.39
Zm00001d032750_P001	Maize	plastid	19.44	18.63
Zm00001d017247_P002	Maize	mitochondrion	21.26	18.39
Zm00001d051119_P001	Maize	nucleus	20.93	18.31
Zm00001d032753_P001	Maize	cytosol	19.27	18.07
Zm00001d018428_P001	Maize	mitochondrion	22.09	18.0
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	21.59	17.78
Zm00001d027622_P001	Maize	mitochondrion	19.6	17.05
Zm00001d025825_P001	Maize	mitochondrion	19.44	16.62
Zm00001d027621_P001	Maize	cytosol	20.6	16.58
Zm00001d014084_P001	Maize	mitochondrion	19.1	16.36
Zm00001d024940_P001	Maize	peroxisome	12.79	10.45
Zm00001d004553_P001	Maize	peroxisome	12.29	9.87
Zm00001d020013_P001	Maize	cytosol	7.64	8.75
GSMUA_Achr4P06340_001	Banana	mitochondrion	0.33	1.04

Protein Annotations

EnsemblPlants:Zm00001d045456_P001	EnsemblPlants:Zm00001d045456_T001	EnsemblPlantsGene:Zm00001d045456	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR036465
InterPro:VWF_A	InterPro:vWFA_dom_sf	PANTHER:PTHR10579	PANTHER:PTHR10579:SF57	PFAM:PF13768	PFscan:PS50234
ProteinID:AQL02295.1	SEG:seg	SMART:SM00327	SUPFAM:SSF53300	TMHMM:TMhelix	UniParc:UPI000843AD2D
UniProt:A0A1D6NW03	MapMan:35.2	:	:	:	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr9:+:22969331..22971755

Molecular Weight (calculated)

63838.9 Da

IEP (calculated)

6.510

GRAVY (calculated)

0.132

Length

602 amino acids

Sequence
(BLAST)

001: MTWLVLTLLL SSAVYFCLLP LIFCPSIGWH PPTIYISPTH THVPQAAAVE TVKVVTTPVF PQIPRLQASK DFQVVVRLEA PPVAQQKARV PVDLAVVLDV
101: GAGGGGSTGS ARLDAVKKAV KFIIGQIHDN DRLAVVGPSP NRRLVIGFPS THEARQNAEK SVDDLEPRGE FASGAGLEEA VKILGELPAT ASGSSRARFV
201: ILVTDTAVTE GSGGRFGKLR RELLPPVHTF GLGAGHDPRA LLSIARESQG TYSFVDDQNT DGITGAIAIC LSGLKDVVAV GTRVRVEAPV GSGVTIERIE
301: SGGVPALPST SAMTTSSSVD NGGCDKQQLL TVTFAGHYAT RDEGGATSPA SPSPTVTTTA ILYVQRPPPE ALDVAGGGAL FRVPVPAVMN LIARFGVLEM
401: VTTFVENEIW RLSSSSSSTV EVATKLRTQW EQFVQARQFW SGLDLGVLDV EVNRMASILE AAGTRIGSSA TAYMLSWLSS YQMQRPTAMG SPSIVAAAFV
501: TVKMQLTLQQ ATIVTIRPQP CIGGCPACEC GCEDRCVQPL PPPVLLPSGR GDDTYRVNPA YPQGVLFNAI NQAMEQMYLA LVRASNLTRC DDAARVELFL
601: PA

Best Arabidopsis Sequence Match ( AT3G54780.1 )
(BLAST)

001: MVSKWKKMKL ALSLNLCNYL PRTLEEEPPS LALNSAETLS DAALLSPLNW PMTPTPSSYR RRLSRSSSKS SKTCSICLNK MKEGCGHAIF TAECSHMFHF
101: HCIASNVKHG NQVCPVCRAK WKEIPIQKPS LDLPYYPFDR CNNDAAISLF RCLPPSQRAI TQGHPEPATF DDDERLEEQI VFDGETEVLK KENRDYVRMM
201: DMKVYPEVSA VPQSKSCENF DVLVHLKAVT GDQISQYRRA PIDLVTVLDI SGSMGGTKLA LLKRAMGFVI QNLGSSDRLS VIAFSSTARR LFPLTRMSDA
301: GRQLALQAVN SLVANGGTNI VDGLRKGAKV MEDRLERNSV ASIILLSDGR DTYTTNHPDP SYKVMLPQIS VHSFGFGSDH DASVMHSVSE VSGGTFSFIE
401: SESVIQDALA QCIGGLLSVA VQELRVEIEG VSPNVRLSSI KAGSYSSLVT GDGHSGLVDL GDLYADEERD FLVSINIPVE EDGHTPLLKL RCLYINPLTK
501: EITTLESHVL QIRRPEYVAE EKVVPIEVVR QRNRFLAAEA MAQARTLAEH GDLEAAVKAI ENFRLVLAET VAAKSCDRFC VALDSELKEM QGRMRSSHMY
601: EASGRAYILS GLSSHSWQRA TARGNSRDSS SFVQAYQTPS MAEMLRRSQA MFLVSPSHHR LIQPLLSFAS QPKPR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN98]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.