Factsheet for Zm00001d007190_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008553_P001	Maize	cytosol	89.82	90.18
OQU90497	Sorghum	cytosol	78.84	76.7
OQU79988	Sorghum	cytosol	81.64	75.6
TraesCS5A01G359200.1	Wheat	cytosol, peroxisome, plastid	69.26	66.22
TraesCS5B01G284200.1	Wheat	cytosol	66.07	66.07
HORVU5Hr1G076190.1	Barley	cytosol, peroxisome	68.06	65.7
TraesCS5A01G284900.1	Wheat	cytosol, mitochondrion, plastid	35.93	62.5
TraesCS2B01G515000.1	Wheat	cytosol	64.47	61.17
TraesCS2D01G459400.1	Wheat	mitochondrion	59.88	57.25
Zm00001d032753_P001	Maize	cytosol	52.3	40.81
Zm00001d027621_P001	Maize	cytosol	50.1	33.56
Zm00001d032750_P001	Maize	plastid	41.52	33.12
Zm00001d027622_P001	Maize	mitochondrion	41.92	30.35
Zm00001d051119_P001	Maize	nucleus	41.52	30.23
Zm00001d017247_P002	Maize	mitochondrion	41.52	29.89
Zm00001d014084_P001	Maize	mitochondrion	40.72	29.02
Os10t0464800-00	Rice	nucleus	53.29	28.13
Zm00001d024886_P002	Maize	cytosol	28.74	27.91
Zm00001d024014_P001	Maize	cytosol	27.54	27.44
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	39.52	27.09
Zm00001d025825_P001	Maize	mitochondrion	37.92	26.99
Zm00001d018428_P001	Maize	mitochondrion	39.52	26.79
Zm00001d051773_P001	Maize	plasma membrane	23.35	25.49
Zm00001d036068_P001	Maize	mitochondrion, plastid	22.95	20.87
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	25.35	20.13
Zm00001d045454_P001	Maize	plasma membrane	25.95	20.0
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	23.95	19.05
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	22.55	18.77
Zm00001d036066_P001	Maize	cytosol	23.35	17.59
Zm00001d035428_P001	Maize	mitochondrion	23.15	17.29
Zm00001d024940_P001	Maize	peroxisome	25.15	17.1
Zm00001d035434_P001	Maize	cytosol	15.37	16.78
Zm00001d004553_P001	Maize	peroxisome	24.95	16.67
Zm00001d020013_P001	Maize	cytosol	13.97	13.31

Protein Annotations

EnsemblPlants:Zm00001d007190_P001	EnsemblPlants:Zm00001d007190_T001	EnsemblPlantsGene:Zm00001d007190	EntrezGene:103647947	Gene3D:3.40.50.410	InterPro:IPR002035
InterPro:IPR036465	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:vWFA_dom_sf	PANTHER:PTHR10579	PANTHER:PTHR10579:SF51
PFAM:PF00092	PFAM:PF14624	PFscan:PS50234	ProteinID:ONM26257.1	SEG:seg	SMART:SM00327
SUPFAM:SSF53300	UniParc:UPI000182E0DD	UniProt:A0A1D6F4K8	MapMan:35.1	:	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr2:-:224194816..224196321

Molecular Weight (calculated)

52924.2 Da

IEP (calculated)

7.182

GRAVY (calculated)

-0.095

Length

501 amino acids

Sequence
(BLAST)

001: MSAPPPAGEY QDDEPLQRST VPAKAPTANG GLALSTQCEF PAIARSASRD RFAVLVHAKA PSDVARAPLD LVTVLDVSSS MKGQKLELLK QAMCFVIDQL
101: GPTDRLSVVT FADDASRLTR LSRMSDSGKA CAKMAVLSLG VLKNTNIGRG LRVGAQVLAG RREKNVVAGM ILLSDGQDTS GFWPTVGPDG TKSYAALVPP
201: SSAPIHTFGF GTNHDAAAMH AVAEATGGTF SFVGNEAAIQ SSFARCVGGL LSVAVQEARV AVTCLHRGVW IQEVKSGAYV SHLGADGIAA TIDVGELYEA
301: EERRFLVLVY VPMVRSTEEV TRLVKARCTY REAATGLARH VAARAAVVQR PLELATLPAP SVDVERERVR LAATEGIAAA RVAADGGQNA GAARILESRL
401: KAVEQSAPGD PTCEAIKEEL RDLSARVGDR AEYQKTGRAC LLVGMSSHAQ QRASGMDVEA TSKASAYLTP KMEEMVDLSR ETGSSGKQEQ PVKQAKVEEE
501: V

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.