Factsheet for Zm00001d051977_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, secretory
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85917	Sorghum	nucleus	97.81	97.01
Zm00001d018428_P001	Maize	mitochondrion	92.48	91.47
Os02t0806700-01	Rice	nucleus	89.33	90.32
TraesCS6B01G413100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	85.64	84.71
TraesCS6D01G360000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	85.5	84.69
TraesCS6A01G375500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	85.09	84.63
HORVU6Hr1G088580.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	85.5	84.23
Zm00001d017247_P002	Maize	mitochondrion	52.94	55.6
Zm00001d051119_P001	Maize	nucleus	52.12	55.38
GSMUA_Achr6P36520_001	Banana	plastid	52.94	55.36
Zm00001d025825_P001	Maize	mitochondrion	48.15	50.0
Zm00001d027622_P001	Maize	mitochondrion	46.37	48.99
Zm00001d032750_P001	Maize	plastid	42.0	48.89
Zm00001d014084_P001	Maize	mitochondrion	43.91	45.66
Zm00001d032753_P001	Maize	cytosol	35.57	40.5
Zm00001d007190_P001	Maize	cytosol	27.09	39.52
Zm00001d008553_P001	Maize	cytosol	26.68	39.08
Zm00001d027621_P001	Maize	cytosol	37.48	36.63
Zm00001d024886_P002	Maize	cytosol	19.97	28.29
Zm00001d024014_P001	Maize	cytosol	18.6	27.04
Zm00001d051773_P001	Maize	plasma membrane	16.42	26.14
Zm00001d004553_P001	Maize	peroxisome	26.27	25.6
Zm00001d024940_P001	Maize	peroxisome	25.58	25.37
Zm00001d036068_P001	Maize	mitochondrion, plastid	18.19	24.14
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	19.84	23.02
Zm00001d020013_P001	Maize	cytosol	16.42	22.81
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	18.88	21.87
Zm00001d045454_P001	Maize	plasma membrane	19.43	21.85
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	17.78	21.59
Zm00001d036066_P001	Maize	cytosol	18.74	20.6
Zm00001d035428_P001	Maize	mitochondrion	16.83	18.33
Zm00001d035434_P001	Maize	cytosol	11.22	17.86

Protein Annotations

EntrezGene:100382472	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	ProteinID:AQK55667.1	EMBL:BT063814
EMBL:BT064039	EMBL:BT064377	EMBL:BT064481	EMBL:BT066455	UniProt:C0P695	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123
PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97	SMART:SM00184	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0001948BC6	InterPro:VWF_A	InterPro:Vwaint_dom	EnsemblPlantsGene:Zm00001d051977
EnsemblPlants:Zm00001d051977_P001	EnsemblPlants:Zm00001d051977_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr4:+:175738176..175743156

Molecular Weight (calculated)

78579.9 Da

IEP (calculated)

8.114

GRAVY (calculated)

-0.325

Length

731 amino acids

Sequence
(BLAST)

001: MESRWRKAKM SLGLNLCVYV PRTLEGDDAA SSPDTASSTA ALVSPVASSS SAATSTNTTP TAASADQSSA SGKVLMPTTP TPTSAGLRLS KSGSKSFKKT
101: CAICLTTMKP GQGHALFTAE CSHTFHFHCI SANVKHGSSS CPVCRIKWKE LPFRGPLPAE LPQGNARINP VNGYQNGGHM NILRPLPRAR SSGRLHHLAT
201: LLPDTDPSTF NDDEPLDLSS EEANDNHQGC LRTVEIKTYP EFTEVPENTS ERNFTVLIHL KAPVAQHLQP SSNLGDGNGL STARAPVDLI TVLDVSGSMA
301: GTKLALLKRA MGFVIQNLGS SDRLSVIAFS SSARRLFPLR RMTESGRQQS LLAVNSLTSN GGTNIAEALR KGSKVIEERQ AKNPVCSIIL LSDGQDTYTV
401: SPTAGVHKGA PEYCALLPST NGNQQVPVHV FGFGADHDSV SLHSISQTSG GTFSFIETEA AIQDAFAQCI GGLLSVVAQG LHVKVESLHP DVHFGSIRSG
501: SYSSRVSDDK RNGSIDVGDL YAEEERDFLV SVNVPPGYGE TALLKVGCVY KDPLMKETVN MADVQVKISR PAFVSVQSVS IEVDRQKNRL HAAEVMAEAR
601: FSAERGDLTT AVSLLEDCRR MIMGSASGQS GDRLCQALDA ELKEMQDRMA NRQRYEASGR AYVLSGLSSH SWQRATARGD STDSESLIQA YQTSSMVDML
701: LRSQTMSRSS TPRPTPQMRH AKSFPARPQP R

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.