CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11654	Soybean	nucleus, plastid	94.91	94.39
KRH51230	Soybean	nucleus	71.27	75.68
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	63.09	66.99
PGSC0003DMT400070011	Potato	nucleus	56.73	58.87
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	56.55	58.46
Bra024913.1-P	Field mustard	mitochondrion	48.73	51.34
TraesCS5A01G178300.1	Wheat	mitochondrion	49.09	51.23
TraesCS5B01G176000.2	Wheat	mitochondrion	48.73	50.85
Zm00001d020013_P001	Maize	cytosol	48.55	50.76
Os09t0298500-01	Rice	nucleus	49.09	50.75
CDY17702	Canola	mitochondrion	35.45	50.65
GSMUA_Achr9P22360_001	Banana	plastid	37.09	50.37
TraesCS5D01G182800.1	Wheat	cytosol, plastid	49.09	47.54
CDX77800	Canola	nucleus	47.82	46.3
OQU89212	Sorghum	cytosol	46.73	45.98
KRH45469	Soybean	nucleus	6.18	19.21
KRH39527	Soybean	extracellular, golgi	18.18	18.48
KRH16916	Soybean	nucleus	22.18	18.1
KRH74431	Soybean	mitochondrion	22.18	17.94
KRH72527	Soybean	nucleus	20.73	17.51
KRH75634	Soybean	nucleus	20.18	17.13
KRH45468	Soybean	cytosol, peroxisome	12.36	16.87

Protein Annotations

EntrezGene:100780745	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EMBL:ACUP02005387	EnsemblPlantsGene:GLYMA_09G017200
UniProt:I1L074	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	EnsemblPlants:KRH36665
ProteinID:KRH36665	ProteinID:KRH36665.1	PFAM:PF13519	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR10579
PANTHER:PTHR10579:SF47	SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000233D34E	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr9:+:1339618..1343533

Molecular Weight (calculated)

60449.9 Da

IEP (calculated)

8.028

GRAVY (calculated)

-0.300

Length

550 amino acids

Sequence
(BLAST)

001: MGEGRRGGTS KLREAARRVA VAAAYACGSF SRRKALVDPV SIDNSCSLSA TASNSSFLSP STTKNSSEEL TEETYSGITT NINNELHSKN LCAICLDPLS
101: YHSKGSSPGQ AIFTAQCSHT FHFACISSNV RHGSVTCPIC RAHWTQLPRN LNNNLGPFTS SNQSDPILRI LDDSIATFRV HRRSLLRSAR YDDDDPVEPD
201: ETPESPKLCF SLVPIPPNAP TSYNPALQVT KHASCPCHLS LHPLTCSSLS LLQSPPMQKP YVMCPSSNRA YLSVKLSHER ATDLVLVASP NGPHLRLLKQ
301: AMALVVFSLR HIDRLAIVTY SSAAARVFPL RRMTSYGKRT ALQVIDRLFY MGQADPVEGL KKGIKILEDR VHKNPESCIL HLSDNPTRPY HAVSMELPST
401: PIHRFHVGFG FGTSSGFVIQ EFEEFLAKML GGIVREIQLR ICGAGEEVGS GRVIRIGEIR GGEERRILLD LGDCTHVYVE YSYIEGEIDE CVRRTGETVV
501: GVGEHKGDVS ENGENTGGGG GGRSSSVESW DFHDPYMARR WAKHLHGYRL

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.