CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 2
plastid 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88877
KRG92440
KRG97263
KRG97647
KRG97711
KRG98973
KRG99305
KRH00851
KRH01966
KRH03247
KRH03966
KRH04275
KRH06335
KRH11576
KRH14870
KRH14933
KRH25249
KRH28216
KRH30315
KRH30413
KRH31163
KRH31225
KRH34357
KRH36588
KRH40381
KRH47754
KRH51187
KRH54345
KRH57111
KRH57236
KRH57556
KRH63594
KRH66641
KRH68981
KRH71094
KRH72403
KRH73205
KRH73215
KRH75261
KRH75571
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65683.1	KRG88877	AT1G01050.1	21798944
AT5G65683.1	KRG97263	AT1G01050.1	21798944
AT5G65683.1	KRG98973	AT1G01050.1	21798944
AT5G65683.1	KRG99305	AT1G01050.1	21798944
AT5G65683.1	KRH06335	AT1G01050.1	21798944
AT5G65683.1	KRH47754	AT1G01050.1	21798944
AT5G65683.1	KRH68981	AT1G01050.1	21798944
AT5G65683.1	KRH72403	AT1G01050.1	21798944
AT5G65683.1	KRH00851	AT1G01510.1	21798944
AT5G65683.1	KRH40381	AT1G01510.1	21798944
AT5G65683.1	KRH30315	AT2G44950.1	21798944
AT5G65683.1	KRH75261	AT2G44950.1	21798944
AT5G65683.1	KRH25249	AT3G03000.1	21798944
AT5G65683.1	KRH30413	AT3G03000.1	21798944
AT5G65683.1	KRG97711	AT3G08530.1	21798944
AT5G65683.1	KRH14933	AT3G08530.1	21798944
AT5G65683.1	KRH31163	AT3G08530.1	21798944
AT5G65683.1	KRH73205	AT3G08530.1	21798944
AT5G65683.1	KRG92440	AT3G22960.1	21798944
AT5G65683.1	KRH34357	AT3G22960.1	21798944
AT5G65683.1	KRH71094	AT3G24140.1	21798944
AT5G65683.1	KRH75571	AT3G24140.1	21798944
AT5G65683.1	KRH03966	AT3G48550.1	21798944
AT5G65683.1	KRH57236	AT3G48550.1	21798944
AT5G65683.1	KRH03247	AT3G54170.1	21798944
AT5G65683.1	KRH54345	AT3G54170.1	21798944
AT5G65683.1	KRH57111	AT3G54170.1	21798944
AT5G65683.1	KRH63594	AT3G54170.1	21798944
AT5G65683.1	KRG97647	AT3G56270.1	21798944
AT5G65683.1	KRH14870	AT3G56270.1	21798944
AT5G65683.1	KRH31225	AT3G56270.1	21798944
AT5G65683.1	KRH73215	AT3G56270.1	21798944
AT5G65683.1	KRH01966	AT4G17220.1	21798944
AT5G65683.1	KRH11576	AT4G17220.1	21798944
AT5G65683.1	KRH36588	AT4G17220.1	21798944
AT5G65683.1	KRH51187	AT4G17220.1	21798944
AT5G65683.1	KRH04275	AT4G17680.1	21798944
AT5G65683.1	KRH28216	AT4G17680.1	21798944
AT5G65683.1	KRH57556	AT4G17680.1	21798944
AT5G65683.1	KRH77271	AT4G17680.1	21798944
AT5G65683.1	KRH66641	AT5G43280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74431	Soybean	mitochondrion	86.32	68.68
KRH45468	Soybean	cytosol, peroxisome	37.34	50.12
VIT_07s0205g00030.t01	Wine grape	nucleus	53.42	44.05
PGSC0003DMT400078676	Potato	plastid	53.97	41.07
KRH75634	Soybean	nucleus	48.98	40.9
Solyc02g091710.2.1	Tomato	plastid	54.16	40.81
Bra017859.1-P	Field mustard	plastid	46.58	39.87
CDY25618	Canola	nucleus, peroxisome, plastid	46.58	38.07
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	47.69	37.66
Bra030218.1-P	Field mustard	nucleus	46.77	37.65
CDX89500	Canola	cytosol, peroxisome, plastid	46.4	37.3
AT2G22680.1	Thale cress	cytosol, peroxisome, plastid	46.77	37.04
CDY31616	Canola	nucleus	46.95	36.97
KRH72527	Soybean	nucleus	43.25	35.94
CDY08765	Canola	plastid	46.77	35.73
AT4G37890.1	Thale cress	nucleus	48.8	35.72
CDY52535	Canola	plastid	46.58	35.49
Bra024408.1-P	Field mustard	plastid	46.4	35.45
Bra031849.1-P	Field mustard	plastid	46.21	35.31
KRH16916	Soybean	nucleus	43.44	34.87
CDY45614	Canola	plastid	45.84	34.83
AT5G65683.1	Thale cress	peroxisome, plastid	46.03	34.73
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	42.14	33.09
GSMUA_Achr4P22090_001	Banana	nucleus	42.7	32.31
GSMUA_Achr5P14740_001	Banana	mitochondrion	41.22	32.23
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	43.44	32.1
GSMUA_Achr7P01890_001	Banana	mitochondrion	41.96	31.79
TraesCS2A01G045100.1	Wheat	peroxisome	43.25	30.79
Zm00001d024940_P001	Maize	peroxisome	41.77	30.66
TraesCS2D01G043700.1	Wheat	peroxisome	42.88	30.41
Zm00001d004553_P001	Maize	peroxisome	42.14	30.4
TraesCS2B01G057300.1	Wheat	peroxisome	42.88	30.13
CDY37838	Canola	plastid	26.62	28.8
OQU81040	Sorghum	peroxisome	36.23	27.41
KRH45469	Soybean	nucleus	6.65	20.34
KRH51230	Soybean	nucleus	17.74	18.53
KRH36665	Soybean	nucleus	18.48	18.18
KRH11654	Soybean	nucleus, plastid	18.3	17.9

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	EMBL:ACUP02005939	ncoils:Coil	EnsemblPlantsGene:GLYMA_09G203400
UniProt:I1L4W2	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	EnsemblPlants:KRH39527
ProteinID:KRH39527	ProteinID:KRH39527.1	PFAM:PF00092	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF59	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI00023C8879	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

hypothetical protein

Coordinates

chr9:+:42764638..42767077

Molecular Weight (calculated)

60068.2 Da

IEP (calculated)

9.757

GRAVY (calculated)

-0.322

Length

541 amino acids

Sequence
(BLAST)

001: MLMLLITDQY VLLSVQSRCG ICMQSARSGQ GTAIFTAECS HTFHFPCIVK KHPIVTCPVC NTSWKELPSD KRGFKVYNDD EPLMSPTSLS RFNPIPESEN
101: EDEEQEQDNI NTERNLQLSL LPEAAIVAAN RNYESYVVVL KLKPPHVTKT SRRAPIDLIA VLDVGGAMSG SKLRLMKSSM RQVISSLRPT DRLSIVAFSA
201: GSKRLLPLRR MTGGGQRSAR RIVDALAAID QTREGTPVKN DAVKKAAKVL EDRREKNAVA SIVVLSDLND SRAGNNMHKP SLVSTTRLAH LEVPVHAVRL
301: GECSHALSDD ALANFVGGLL NVVAQDVRIQ LEVVSRSRAV EIAGVYSLSG RPVSLGSSDW IRLGDLYAEE EREFLVELKV PAASAGSHHV LTVRSSYRNP
401: LTREPLIPVE QAMLVPRPHA VRSSCAKIER LRNLHVTARA VAESSRLAEH NDLSGAHHLL SSARALLLQS SKPEEEFLRW LEAEQAELQR RRQRQTQRNS
501: RVEEKVEPLT PTSAWRAAER KNLKSQHLPL VFPLRSPYPP N

Best Arabidopsis Sequence Match ( AT4G37890.1 )
(BLAST)

001: MMNGLRRTFW SSIHKKKDNN RVDDSLDRQK PTTTSRFGFF SNPSTPRSET RPDSVTCSPT IPCQSWSATA ISTPSPSLPA SPKLQCDTSG DVTPTRNRSP
101: LSFLSVSSSS STPSSPKSPA SFSLLKSKLC FTKVRILNRN NQVNIFKNNS KLTFLRLCYE QSSISSSKCG ICLQSAKAGR GTAIFTAECS HTFHFPCVAS
201: RAGDRNLLSD CPVCGASWRE TSLLPLSLSS SLHESGSESD SKIRESKNNN KSLRVYNDDE PLISSPISRT GFNTIPESNE DEEEEDNDDG EFKGFYVNTP
301: SPLTTKKMLT DSVTGHVDVK LSSEAAIVAV GRGNETYSVL MKIKSPSLPT ARRSPVDLVT VIDVSGGNIE MVKRAMRQVI SSLRETDRLS MVSFSSSSKR
401: LTPLRRMTAN GRRLARRIVD DISGDGDGMS VNDAVKKAAK VIEDRRQKNL FTTIFVLTDR NRNSAHQAQL AQPDFVTSTR FSHLEIPTHT IWLGACNHAL
501: PEDVFAKRIK SLLSLSVQDL TLNLGLVSGS GQGKVTSVYS LSGRPVWLGS GLIRLGDMYG DEEREVLVEL KSPSSSRSQR IMTVRSRHVD PTTQEIKNYE
601: DRALMIPRPT TVRSSDPSIA RLRNLHVSTR AVAESRRLVE VNDYSGAERM LTSARALLVQ YGLSSSDSCL RGLEAELADL NRLRGRHVAV KSPEPVVQKS
701: EPLTPTSAWR AAERLAKVAI MRKHMNRVSD LHGFENARF

Arabidopsis Description

EDA40Probable E3 ubiquitin-protein ligase EDA40 [Source:UniProtKB/Swiss-Prot;Acc:F4JSV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.