Factsheet for Bra030218.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25618	Canola	nucleus, peroxisome, plastid	98.21	99.7
AT2G22680.1	Thale cress	cytosol, peroxisome, plastid	79.46	78.18
Bra017859.1-P	Field mustard	plastid	57.74	61.39
KRH74431	Soybean	mitochondrion	49.26	48.68
VIT_07s0205g00030.t01	Wine grape	nucleus	47.02	48.17
KRH45468	Soybean	cytosol, peroxisome	28.42	47.39
PGSC0003DMT400078676	Potato	plastid	49.7	46.98
KRH39527	Soybean	extracellular, golgi	37.65	46.77
Solyc02g091710.2.1	Tomato	plastid	49.7	46.52
Bra031849.1-P	Field mustard	plastid	47.17	44.77
Bra024408.1-P	Field mustard	plastid	46.43	44.07
KRH75634	Soybean	nucleus	42.41	43.98
Bra040498.1-P	Field mustard	plastid	42.56	39.29
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	39.43	38.46
GSMUA_Achr5P14740_001	Banana	mitochondrion	38.1	36.99
Zm00001d024940_P001	Maize	peroxisome	40.48	36.91
TraesCS2A01G045100.1	Wheat	peroxisome	41.07	36.32
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	39.29	36.07
TraesCS2D01G043700.1	Wheat	peroxisome	40.92	36.04
Zm00001d004553_P001	Maize	peroxisome	40.03	35.87
GSMUA_Achr7P01890_001	Banana	mitochondrion	38.1	35.85
TraesCS2B01G057300.1	Wheat	peroxisome	40.77	35.58
KRH45469	Soybean	nucleus	9.23	35.03
GSMUA_Achr4P22090_001	Banana	nucleus	37.05	34.83
OQU81040	Sorghum	peroxisome	35.71	33.57
Bra002456.1-P	Field mustard	mitochondrion, plastid	26.79	25.71
Bra005066.1-P	Field mustard	mitochondrion	25.0	25.61
Bra020234.1-P	Field mustard	mitochondrion	25.89	25.04
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	22.47	24.71
Bra024913.1-P	Field mustard	mitochondrion	16.52	21.26
Bra018663.1-P	Field mustard	nucleus	23.66	12.05

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	EnsemblPlantsGene:Bra030218	EnsemblPlants:Bra030218.1	EnsemblPlants:Bra030218.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0048364	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M4EN48	PFAM:PF13519	PFAM:PF17123
PFscan:PS50089	PANTHER:PTHR10579	PANTHER:PTHR10579:SF59	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	UniParc:UPI0002544216	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

AT2G22680 (E=3e-236) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA04:+:9892004..9894022

Molecular Weight (calculated)

72938.8 Da

IEP (calculated)

10.133

GRAVY (calculated)

-0.300

Length

672 amino acids

Sequence
(BLAST)

001: MISGWRRAFC TSIPKERHDE DDSNCVLDSP EDQRFRHKPS SKFGFFSTPS TPRSVSGTYS LRCRTSAATA VATATPSASL PSTPKLTCRT TTAESTPATT
101: PTRNSSLVSS PASFSLLKSK LRFNKAKSSN QCGICSQSVK PGQGTAIFTA ECSHTFHFPC VTSRAAADHN RLVTCPVCGS SLLPETRNYG KPGSQTGQET
201: SRLKVYNDDE PLISSPMSPA GFHTILESDE NEDGEFTGFS VNTPSPLTAK LLTDDSLRNV EVKLSPESAI VAAVKGYETY SVVMKVKSPP LTTARRLPVD
301: LVIVLDVAGR LESLKRTMKL LISNLKETDR LSIVAFSSSS KRLLPLRRMT ANGRRSARRI VDIISVSGAG VACNGGGITA NDALKKAVKV LEDRRQKNPF
401: ATVFVLTDRQ AHQAQLAYSK IPVVWLGAWD HAVSEDAFAR SINGYLSLSV QDLGLSLGLV SGSGQGEITA VYSLSGRPAW LGTGSVRLGD MYAGEERALL
501: VEIKAPVSSS TTSRSHRILT VRSRYVDPTT QEIRNPEDRA LLIPYPVTVR SSSNPNIGRL RNLHVSTRAV AESRRLIERN NYSGAERLLT SARALLVQYG
601: LSSSDTCLRG LDAELADLNG VRGRQLTSSL ESLEPLTPTS AWKAAERLAK VAKMRKHMNR VSDLHGFENA RF

Best Arabidopsis Sequence Match ( AT2G22680.1 )
(BLAST)

001: MLNGWRRAFC TSIPKETNQN DVDDDGLVGL RHKSTSRFGF FSTPSTPRSD SGTGTYSLRC RTSTATAVST TSSLPGTPKL KCKTTTTGET TPRNRSLVSL
101: LTPSSSSISP ASFTLLKSKL RFKQSSSNKC GICLQSVKSG QGTAIFTAEC SHTFHFPCVT SRAAANHNRL ASCPVCGSSL LPEIRNYAKP ESQIKPEIKN
201: KSLRVYNDDE ALISSPISPA GFHTILESDE NEDCEEFTGF SVNTPSPLTA KLLTDRNVDV KLSPESAIVA SGKGYETYSV VMKVKSPPFP TARGFARRVP
301: VDLVAVLDVS GRNSGGKLEM LKQTMRIVLS NLREMDRLSI IAFSSSSKRL SPLRRMTANG RRSARRIVDI ITVPGSVSGV GIDFSGEGMS VNDALKKAVK
401: VLDDRRQKNP FTAVFVLTDR QAHQVAQLAH SRIPIHTIWL SHAIPEDAFA RTINGYLSLS VQDLGLQLGI VSGLGQGEIT SVYSLSGRPA WLGTGSIRLG
501: DMYAEEERAL LVEIKSPVNN SLTGSRSHKI MTVRSRYVDP TTQELRNPED RALLIPTPLT VRSSSNPNIS RLRNLHVSTR AVAESRRLIE RNHYSGAHRL
601: LTSARALLVQ HGLSSSDACI RGLDAEIADL NSVKGRHVAA SESLESLTPT SAWKAAERLA KVAMVRKHMN RVSDLHGFEN ARF

Arabidopsis Description

WAVH1E3 ubiquitin-protein ligase WAVH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ46]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.