Factsheet for Bra031849.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001896.1-P
Bra001929.1-P
Bra003173.1-P
Bra003174.1-P
Bra004879.1-P
Bra007052.1-P
Bra007233.1-P
Bra012650.1-P
Bra018049.1-P
Bra021379.1-P
Bra023780.1-P
Bra026236.1-P
Bra027479.1-P
Bra028351.1-P
Bra028357.1-P
Bra029904.1-P
Bra032616.1-P
Bra033258.1-P
Bra033292.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65683.1	Bra032616.1-P	AT1G01050.1	21798944
AT5G65683.1	Bra033292.1-P	AT1G01050.1	21798944
AT5G65683.1	Bra033258.1-P	AT1G01510.1	21798944
AT5G65683.1	Bra004879.1-P	AT2G44950.1	21798944
AT5G65683.1	Bra040332.1-P	AT2G44950.1	21798944
AT5G65683.1	Bra021379.1-P	AT3G03000.1	21798944
AT5G65683.1	Bra001896.1-P	AT3G22960.1	21798944
AT5G65683.1	Bra023780.1-P	AT3G22960.1	21798944
AT5G65683.1	Bra001929.1-P	AT3G24140.1	21798944
AT5G65683.1	Bra028351.1-P	AT3G24140.1	21798944
AT5G65683.1	Bra028357.1-P	AT3G24140.1	21798944
AT5G65683.1	Bra018049.1-P	AT3G48550.1	21798944
AT5G65683.1	Bra029904.1-P	AT3G48550.1	21798944
AT5G65683.1	Bra003173.1-P	AT3G54170.1	21798944
AT5G65683.1	Bra003174.1-P	AT3G54170.1	21798944
AT5G65683.1	Bra007052.1-P	AT3G54170.1	21798944
AT5G65683.1	Bra007233.1-P	AT3G56270.1	21798944
AT5G65683.1	Bra026236.1-P	AT4G17220.1	21798944
AT5G65683.1	Bra012650.1-P	AT4G17680.1	21798944
AT5G65683.1	Bra027479.1-P	AT5G43280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37838	Canola	plastid	67.94	96.2
Bra024408.1-P	Field mustard	plastid	80.65	80.65
AT5G65683.1	Thale cress	peroxisome, plastid	78.67	77.68
VIT_07s0205g00030.t01	Wine grape	nucleus	45.06	48.63
Bra030218.1-P	Field mustard	nucleus	44.77	47.17
KRH74431	Soybean	mitochondrion	45.06	46.91
KRH39527	Soybean	extracellular, golgi	35.31	46.21
KRH45468	Soybean	cytosol, peroxisome	25.57	44.91
Bra017859.1-P	Field mustard	plastid	39.97	44.78
PGSC0003DMT400078676	Potato	plastid	44.92	44.73
Solyc02g091710.2.1	Tomato	plastid	45.34	44.71
KRH75634	Soybean	nucleus	37.57	41.05
Bra040498.1-P	Field mustard	plastid	38.7	37.64
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	36.44	37.45
GSMUA_Achr5P14740_001	Banana	mitochondrion	35.45	36.27
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	37.01	35.79
Zm00001d024940_P001	Maize	peroxisome	36.86	35.41
GSMUA_Achr7P01890_001	Banana	mitochondrion	35.59	35.29
TraesCS2A01G045100.1	Wheat	peroxisome	37.57	35.0
GSMUA_Achr4P22090_001	Banana	nucleus	35.03	34.69
TraesCS2B01G057300.1	Wheat	peroxisome	37.43	34.42
TraesCS2D01G043700.1	Wheat	peroxisome	37.01	34.34
Zm00001d004553_P001	Maize	peroxisome	36.3	34.27
OQU81040	Sorghum	peroxisome	32.49	32.17
KRH45469	Soybean	nucleus	7.77	31.07
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	22.32	25.86
Bra005066.1-P	Field mustard	mitochondrion	23.73	25.61
Bra002456.1-P	Field mustard	mitochondrion, plastid	25.0	25.29
Bra020234.1-P	Field mustard	mitochondrion	24.72	25.18
Bra024913.1-P	Field mustard	mitochondrion	16.24	22.03
Bra018663.1-P	Field mustard	nucleus	22.6	12.13

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	EnsemblPlantsGene:Bra031849	EnsemblPlants:Bra031849.1	EnsemblPlants:Bra031849.1-P
ncoils:Coil	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M4ESR9
PFAM:PF00092	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF59	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002546ACD	InterPro:VWF_A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

AT5G65683 (E=2e-271) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA02:+:27501593..27503937

Molecular Weight (calculated)

76963.7 Da

IEP (calculated)

10.184

GRAVY (calculated)

-0.327

Length

708 amino acids

Sequence
(BLAST)

001: MVFGWRKAFC TSFPSNQDKS HQSSSDLLHT DPPIPTPRLR SKFGFFSNPS TPRLRSRGGG GGNGCRSVAS TAAATPSLPT SPRLQCRTTS NATPRTSNPS
101: TPKFLSNPSS PKSSSPSSHA GVSLLRATLL LNQSNSNRCG ICLQRVHSDQ INSTAIFTAE CSHSFHLSCA VRLQDKRCPF CSTAWSHAPR KDPPTANFGS
201: DPIRKPGIRE IKTGKSLRVY NDDEPLAYSP VSLARFNTIL ESDENDDVEE DDEFPGFFPD SSITPAASIS GNLEVQLLPE SAVVETGKRI ETHAVVMKVK
301: ASPMRDAVRA RRPSIDLVTV LDLSGGGANL PTVKHAMRLV ISLLREMDRL SIVVFSAGSK RLMPLRRMTA KGRGSARRIV DSLGGVEATG GGGMSVSDAL
401: KKAVKVVEDR RERNPTASVL VLSDGQDQPE AVLKARLSST RVPFVVSTTR LSRPMIPVHS VWIASPSALQ YAPLRDAFTE RVAALFNVVL HDVKLNLGLV
501: SASPLTEISA VYSLTGRPES FGSGSAVVVG DLFAEEEREY LVELRVPTSS SGSHRVMSVR SSVVDPATLQ PFPCPNEKRF LIPRPQTVRF VSASIERLRS
601: RHSVCRAVAE SRKMIERGDL AGAYEVLTAA RSNALDENDS LKSLDAELAE LNRLKPRDGT ANRAEEEKTE QLTPTSAWRA AEKLAKVAIM RKHLNRVSDM
701: HGLENARF

Best Arabidopsis Sequence Match ( AT5G65683.1 )
(BLAST)

001: MVFGWRKAFC TSVSSNQDKP QQHSSLHTTD PPIPTPRFRS KFGFLSNPST PRLRSRGGSG TGCRSSASTS VTIPSLPTSP KLHCRTTSNA TPRTSNSSSP
101: KFFSNPSSPK SSSSSSSQGG GGVSLLRATL LLNKSNSSRC AICLQRVNSN QSNSTAAIFT AECSHSFHLS CVNGLEDKRC PFCSAAWNHA PKSNYPAVNN
201: NFGSDPIRRP EIREIKTGKS LRVYNDDEPL AYSPVSLAQI NTIHESDEND DVEDDDDFPG FFRDSSITSD MVPSISGNLE VKLLPESAVV ETGKKKETHV
301: VIMKLKASPS PSSITDAIKA RRPSIDLVTV LDLSNGGANL QTVKHAMRSV ISLLREMDRL SIVVFSTGSK RLMPLRRMTA KGRRSARRMV DALGGMETTG
401: GVGMSVNDAL KKAVKVVEDR REKNPSTSIF VLSDGQDQPE AVLKAKLNAT RIPFVVSTTR FSRPEIPVHS VYIASPGALL HAPLRDAFTE RIASLLNVTL
501: HNVKLNLSLV NGSHLTEISS VYSLTGRLEN FGSGSVIQVG DLFAEEEREF LVELKVPTSS SGSHQVMSVQ SSIVDQMTHQ PMTCPKEKRF LIPRPQSVRY
601: VSSSIERLRN LHSMCRAVAD SRRLIEREDL SGAYQVLTTA RSNASHSDDS LRSLEVELNE LSRIKPRNSI LNRTEDKPEQ LTPTSAWRAA EKLAKVAIMR
701: KHLNRVSDMH GLENARF

Arabidopsis Description

WAVH2Probable E3 ubiquitin-protein ligase WAVH2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX9]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.