Factsheet for Bra007052.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 4
extracellular 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003173.1-P
Bra003174.1-P
Bra007052.1-P
Bra024287.1-P
Bra025770.1-P
Bra035280.1-P
Bra036122.1-P
Bra037775.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54170.1	Bra025770.1-P	AT1G19830.1	21798944
AT3G54170.1	Bra036122.1-P	AT1G54770.1	21798944
AT3G54170.1	Bra003173.1-P	AT3G54170.1	21798944
AT3G54170.1	Bra003174.1-P	AT3G54170.1	21798944
AT3G54170.1	Bra007052.1-P	AT3G54170.1	21798944
AT3G54170.1	Bra035280.1-P	AT4G10760.1	18505803
AT3G54170.1	Bra024287.1-P	AT5G64350.1	9807817
AT3G54170.1	Bra037775.1-P	AT5G64350.1	9807817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78214	Canola	nucleus	89.94	96.6
AT3G54170.1	Thale cress	nucleus	72.7	76.67
Bra003174.1-P	Field mustard	endoplasmic reticulum, nucleus	58.62	68.69
VIT_17s0000g08940.t01	Wine grape	nucleus	59.77	60.47
PGSC0003DMT400046635	Potato	nucleus	58.33	59.36
KRH57111	Soybean	nucleus	57.47	59.0
KRH03247	Soybean	nucleus	58.05	58.89
Solyc03g112520.2.1	Tomato	nucleus	57.76	58.77
TraesCS7D01G234600.1	Wheat	nucleus	58.05	57.39
Os06t0474200-01	Rice	nucleus	58.05	57.39
TraesCS7A01G234600.1	Wheat	nucleus	58.05	57.39
GSMUA_Achr6P08880_001	Banana	nucleus	58.05	57.22
TraesCS7B01G132800.1	Wheat	nucleus	58.33	57.18
KRH54345	Soybean	nucleus	54.31	55.1
KRH63594	Soybean	nucleus	55.75	54.8
Zm00001d015194_P001	Maize	nucleus	53.16	50.0
EES04471	Sorghum	nucleus	52.87	49.86
HORVU7Hr1G048110.2	Barley	plastid	57.18	43.83
Bra003173.1-P	Field mustard	nucleus	27.3	42.6

Protein Annotations

MapMan:16.5.1.1.3	EnsemblPlantsGene:Bra007052	EnsemblPlants:Bra007052.1	EnsemblPlants:Bra007052.1-P	ncoils:Coil	GO:GO:0000381
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0080009	UniProt:M4CS60
PFAM:PF17098	PANTHER:PTHR15217	TMHMM:TMhelix	UniParc:UPI00025428A5	InterPro:WTAP	InterPro:WTAP/Mum2
SEG:seg	:	:	:	:	:

Description

AT3G54170 (E=5e-118) ATFIP37, FIP37 | ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37); protein binding

Coordinates

chrA09:+:27052914..27055489

Molecular Weight (calculated)

39679.1 Da

IEP (calculated)

4.662

GRAVY (calculated)

-0.721

Length

348 amino acids

Sequence
(BLAST)

001: MPPPELQVSH IYRFMTLILL SPNLSAVTLT FFRITLTGSK RSFDDLEDDE DDIFGSKKGR TEVEEDAPGV TTGVILQLRE SLKNCEDELA SCQNELESAK
101: TEINKWKSAF QNESFVPAGK SPEPRFLIDY IQNLKSSERS LKEQLEIAKR KEASCIVQYA KREQEMAELK SAVRDLKSQL KPASMQARRL LLDPAIHEEF
201: SRLKNLVEEK DKKIKELQDS YTAVTFTPLG VKGRMLMEKC KTLQEENEEI GRQAAEGKIH ELAMKLSVQK SQNAELRKQF EGLFKHMEGL INDAERSNET
301: VIILQDKLEE KEKELERVKK GMEEEVVADD VGDEAHDDED PKEIDGGE

Best Arabidopsis Sequence Match ( AT3G54170.1 )
(BLAST)

001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE

Arabidopsis Description

FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.