Factsheet for Bra003173.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003173.1-P
Bra003174.1-P
Bra007052.1-P
Bra024287.1-P
Bra025770.1-P
Bra035280.1-P
Bra036122.1-P
Bra037775.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54170.1	Bra025770.1-P	AT1G19830.1	21798944
AT3G54170.1	Bra036122.1-P	AT1G54770.1	21798944
AT3G54170.1	Bra003173.1-P	AT3G54170.1	21798944
AT3G54170.1	Bra003174.1-P	AT3G54170.1	21798944
AT3G54170.1	Bra007052.1-P	AT3G54170.1	21798944
AT3G54170.1	Bra035280.1-P	AT4G10760.1	18505803
AT3G54170.1	Bra024287.1-P	AT5G64350.1	9807817
AT3G54170.1	Bra037775.1-P	AT5G64350.1	9807817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67590	Canola	nucleus	98.21	97.77
AT3G54170.1	Thale cress	nucleus	44.39	30.0
PGSC0003DMT400046635	Potato	nucleus	43.05	28.07
Solyc03g112520.2.1	Tomato	nucleus	42.6	27.78
Bra007052.1-P	Field mustard	endoplasmic reticulum	42.6	27.3
VIT_17s0000g08940.t01	Wine grape	nucleus	41.7	27.03
GSMUA_Achr6P08880_001	Banana	nucleus	40.81	25.78
KRH57111	Soybean	nucleus	39.01	25.66
KRH03247	Soybean	nucleus	39.46	25.66
TraesCS7B01G132800.1	Wheat	nucleus	39.91	25.07
TraesCS7D01G234600.1	Wheat	nucleus	39.46	25.0
TraesCS7A01G234600.1	Wheat	nucleus	39.46	25.0
Os06t0474200-01	Rice	nucleus	39.46	25.0
Bra003174.1-P	Field mustard	endoplasmic reticulum, nucleus	32.74	24.58
KRH63594	Soybean	nucleus	37.22	23.45
KRH54345	Soybean	nucleus	35.87	23.32
EES04471	Sorghum	nucleus	35.87	21.68
Zm00001d015194_P001	Maize	nucleus	34.98	21.08
HORVU7Hr1G048110.2	Barley	plastid	38.56	18.94

Protein Annotations

EnsemblPlants:Bra003173.1	EnsemblPlants:Bra003173.1-P	EnsemblPlantsGene:Bra003173	ncoils:Coil	UniParc:UPI00025413D2	UniProt:M4CG40
MapMan:35.1	:	:	:	:	:

Description

AT3G54170 (E=4e-029) ATFIP37, FIP37 | ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37); protein binding

Coordinates

chrA07:+:11685540..11687157

Molecular Weight (calculated)

24899.1 Da

IEP (calculated)

4.500

GRAVY (calculated)

-0.700

Length

223 amino acids

Sequence
(BLAST)

001: MDGGDYSASG TKRSFEDDEI DNSVSKKRCT CTKVDEEAAM IVSLTESLQS CKDELASCQS ELESAKAEID KWNSAFKEES FVPSRKSPEP QFVIDYIQTL
101: RSSKKSLKEE LEIAQMKLAI RDLKSQLKPE SMKIDEDPEV DGEQQGSTPA GTSRIAYLED ELRAANTVIA ELREVQAVRV DALEKAQATH AKEFEYLKNN
201: MLALQQSRRL VLTPAPENAD AQK

Best Arabidopsis Sequence Match ( AT3G54170.1 )
(BLAST)

001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE

Arabidopsis Description

FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.