Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63594 | Soybean | nucleus | 86.3 | 83.62 |
| KRH57111 | Soybean | nucleus | 76.09 | 76.99 |
| KRH03247 | Soybean | nucleus | 76.97 | 76.97 |
| VIT_17s0000g08940.t01 | Wine grape | nucleus | 71.14 | 70.93 |
| PGSC0003DMT400046635 | Potato | nucleus | 66.47 | 66.67 |
| Solyc03g112520.2.1 | Tomato | nucleus | 65.31 | 65.5 |
| GSMUA_Achr6P08880_001 | Banana | nucleus | 63.56 | 61.76 |
| TraesCS7D01G234600.1 | Wheat | nucleus | 63.27 | 61.65 |
| TraesCS7A01G234600.1 | Wheat | nucleus | 63.27 | 61.65 |
| AT3G54170.1 | Thale cress | nucleus | 59.18 | 61.52 |
| TraesCS7B01G132800.1 | Wheat | nucleus | 63.56 | 61.41 |
| CDX73501 | Canola | nucleus | 56.56 | 60.06 |
| Os06t0474200-01 | Rice | nucleus | 61.22 | 59.66 |
| CDX67592 | Canola | nucleus | 59.18 | 59.01 |
| CDY07554 | Canola | nucleus | 58.6 | 58.26 |
| CDX78214 | Canola | nucleus | 54.81 | 58.02 |
| Bra007052.1-P | Field mustard | endoplasmic reticulum | 55.1 | 54.31 |
| EES04471 | Sorghum | nucleus | 56.85 | 52.85 |
| Bra003174.1-P | Field mustard | endoplasmic reticulum, nucleus | 44.31 | 51.18 |
| Zm00001d015194_P001 | Maize | nucleus | 55.1 | 51.08 |
| HORVU7Hr1G048110.2 | Barley | plastid | 62.97 | 47.58 |
| CDX67590 | Canola | nucleus | 23.91 | 36.61 |
| Bra003173.1-P | Field mustard | nucleus | 23.32 | 35.87 |
| CDY51583 | Canola | nucleus | 23.03 | 34.96 |
Protein Annotations
| EntrezGene:100800842 | MapMan:16.5.1.1.3 | EMBL:ACUP02003514 | ncoils:Coil | EnsemblPlantsGene:GLYMA_06G179400 | GO:GO:0000381 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0080009 | UniProt:I1KCD2 | EnsemblPlants:KRH54345 | ProteinID:KRH54345 |
| ProteinID:KRH54345.1 | PFAM:PF17098 | PANTHER:PTHR15217 | UniParc:UPI00023392D1 | InterPro:WTAP | InterPro:WTAP/Mum2 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:15232825..15240902
Molecular Weight (calculated)
39170.2 Da
IEP (calculated)
5.561
GRAVY (calculated)
-0.998
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPTHFDDD FDFGDGFGGR HSGNKRSSPD YDDEDYDNDP FAPKKSKTKA EEASGVTTGM ILSLRESLQN CKETLATYQN ELEAAKSEIQ SWHSTLKNEP
101: SKSAGITPEP KMLINYLQTL KFSEESLREQ LEKAKKKEAA FIVTFAKREQ EIAELKSAVR DLKVQLKPPS MQSRRLLLDP AVHEEFTRLK NLVEEKDKKV
201: KELQDNIAAV SFTPQSKMGK MLMAKCRTLQ EENEEIGNQA SEGKMHELGM KLALQKSQNS QLRSQFEGLQ KHMEGLTNDV ERSNEMVLML QEKLEDRDRE
301: IQRLKHELQQ KNLEDQRLKH KLQQKNLEDG NDNNETIAGE AAN
101: SKSAGITPEP KMLINYLQTL KFSEESLREQ LEKAKKKEAA FIVTFAKREQ EIAELKSAVR DLKVQLKPPS MQSRRLLLDP AVHEEFTRLK NLVEEKDKKV
201: KELQDNIAAV SFTPQSKMGK MLMAKCRTLQ EENEEIGNQA SEGKMHELGM KLALQKSQNS QLRSQFEGLQ KHMEGLTNDV ERSNEMVLML QEKLEDRDRE
301: IQRLKHELQQ KNLEDQRLKH KLQQKNLEDG NDNNETIAGE AAN
001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
Arabidopsis Description
FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.