Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07554 | Canola | nucleus | 93.31 | 93.04 |
| Bra003174.1-P | Field mustard | endoplasmic reticulum, nucleus | 73.84 | 85.52 |
| CDX73501 | Canola | nucleus | 77.91 | 82.97 |
| AT3G54170.1 | Thale cress | nucleus | 79.07 | 82.42 |
| CDX78214 | Canola | nucleus | 77.62 | 82.41 |
| VIT_17s0000g08940.t01 | Wine grape | nucleus | 65.99 | 65.99 |
| KRH57111 | Soybean | nucleus | 63.95 | 64.9 |
| PGSC0003DMT400046635 | Potato | nucleus | 63.95 | 64.33 |
| KRH03247 | Soybean | nucleus | 63.66 | 63.85 |
| Solyc03g112520.2.1 | Tomato | nucleus | 63.08 | 63.45 |
| TraesCS7D01G234600.1 | Wheat | nucleus | 61.92 | 60.51 |
| TraesCS7A01G234600.1 | Wheat | nucleus | 61.92 | 60.51 |
| TraesCS7B01G132800.1 | Wheat | nucleus | 62.21 | 60.28 |
| Os06t0474200-01 | Rice | nucleus | 60.76 | 59.38 |
| KRH54345 | Soybean | nucleus | 59.01 | 59.18 |
| GSMUA_Achr6P08880_001 | Banana | nucleus | 60.47 | 58.92 |
| KRH63594 | Soybean | nucleus | 59.59 | 57.91 |
| Zm00001d015194_P001 | Maize | nucleus | 55.23 | 51.35 |
| EES04471 | Sorghum | nucleus | 54.65 | 50.95 |
| CDX67590 | Canola | nucleus | 30.52 | 46.88 |
| HORVU7Hr1G048110.2 | Barley | plastid | 61.05 | 46.26 |
| CDY51583 | Canola | nucleus | 29.65 | 45.13 |
Protein Annotations
| MapMan:16.5.1.1.3 | GO:A0A078BTS4 | EnsemblPlants:CDX67592 | ProteinID:CDX67592 | ProteinID:CDX67592.1 | ncoils:Coil |
| GO:GO:0000381 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0048024 | GO:GO:0080009 | EnsemblPlantsGene:GSBRNA2T00098736001 |
| PFAM:PF17098 | PANTHER:PTHR15217 | UniParc:UPI0001CAAD34 | InterPro:WTAP | InterPro:WTAP/Mum2 | SEG:seg |
Description
BnaA07g16320D
Coordinates
chrLK031787:+:1127074..1129790
Molecular Weight (calculated)
39076.2 Da
IEP (calculated)
4.909
GRAVY (calculated)
-0.803
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSLQDDDF GGDFSASNAT RAASGSKRSF GDLEDDEDDI FGSKKVRTKA EEAAPGVATG MILSLRESLQ NCKDDLASSQ NELESAKAEI LKWKSAFQNE
101: SFIPAGKSPE PRFLIDYIQN LKSSERSLKE QLEIAKRKEA SYIVQYAKRE QEMAELKSAV RDLKSQLKPA SMQARRLLLD PAIHEEFSRL KNLVEEKDKK
201: VKELQDSLTA FTFTPLSLKG KMLMEKCKTL QEENEEIGHQ AAEGKIHELA MKLSMQKSQN AELRKQFEGL YKHMEELTND VERSNETVII LQDKLEEKDK
301: ELERVKKGME VVVSDVAEKK DDGEDKDPKY SALQTMFTSI QSER
101: SFIPAGKSPE PRFLIDYIQN LKSSERSLKE QLEIAKRKEA SYIVQYAKRE QEMAELKSAV RDLKSQLKPA SMQARRLLLD PAIHEEFSRL KNLVEEKDKK
201: VKELQDSLTA FTFTPLSLKG KMLMEKCKTL QEENEEIGHQ AAEGKIHELA MKLSMQKSQN AELRKQFEGL YKHMEELTND VERSNETVII LQDKLEEKDK
301: ELERVKKGME VVVSDVAEKK DDGEDKDPKY SALQTMFTSI QSER
001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
Arabidopsis Description
FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.