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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • plasma membrane 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7D01G234600.1 Wheat nucleus 86.65 86.65
TraesCS7A01G234600.1 Wheat nucleus 86.36 86.36
TraesCS7B01G132800.1 Wheat nucleus 85.8 85.07
GSMUA_Achr6P08880_001 Banana nucleus 73.3 73.09
VIT_17s0000g08940.t01 Wine grape nucleus 68.47 70.06
EES04471 Sorghum nucleus 71.88 68.56
Zm00001d015194_P001 Maize nucleus 71.31 67.84
HORVU7Hr1G048110.2 Barley plastid 84.94 65.86
KRH57111 Soybean nucleus 63.35 65.78
PGSC0003DMT400046635 Potato nucleus 62.78 64.62
KRH03247 Soybean nucleus 62.78 64.43
Solyc03g112520.2.1 Tomato nucleus 62.5 64.33
CDX73501 Canola nucleus 57.95 63.16
CDX78214 Canola nucleus 57.39 62.35
AT3G54170.1 Thale cress nucleus 58.24 62.12
KRH54345 Soybean nucleus 59.66 61.22
CDX67592 Canola nucleus 59.38 60.76
KRH63594 Soybean nucleus 60.51 60.17
CDY07554 Canola nucleus 58.81 60.0
Bra007052.1-P Field mustard endoplasmic reticulum 57.39 58.05
Bra003174.1-P Field mustard endoplasmic reticulum, nucleus 42.05 49.83
CDX67590 Canola nucleus 25.57 40.18
Bra003173.1-P Field mustard nucleus 25.0 39.46
CDY51583 Canola nucleus 25.0 38.94
Protein Annotations
MapMan:16.5.1.1.3EntrezGene:4341029EMBL:AK242820UniProt:B7F9Q5ProteinID:BAS97763.1ncoils:Coil
ProteinID:EEE65709.1GO:GO:0000381GO:GO:0001510GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0008150
GO:GO:0008152GO:GO:0009506GO:GO:0009987GO:GO:0010073GO:GO:0043621GO:GO:0080009
EnsemblPlantsGene:Os06g0474200EnsemblPlants:Os06t0474200-01PFAM:PF17098PANTHER:PTHR15217UniParc:UPI000188AFE3InterPro:WTAP
InterPro:WTAP/Mum2RefSeq:XP_015644314.1SEG:seg:::
Description
SKIP interacting protein 2, SKIPa-interacting protein 2, SKIPa-interacting protein 2Similar to SKIP interacting protein 2. (Os06t0474200-01)
Coordinates
chr6:-:15863304..15872695
Molecular Weight (calculated)
39359.4 Da
IEP (calculated)
4.836
GRAVY (calculated)
-0.773
Length
352 amino acids
Sequence
(BLAST)
001: MADSPSPRLD EEDAFGRDFN SSPSPTAPPA RSGEKRPFGD LDDDDEDVFA SKKGKTKVEE SAPGAATGMI LSLRESLQNC KDNLASCQVE REAAKSEVQK
101: WHSAFQNIPA VPAGTNPDPV SVVSYLNNLK SSEESLKEQL EKAKKREAAF IVTFAKREQE IAELKSAVRD LKTQLRPPSM QTRRLLLDPA IHEEFTRLKN
201: LVEEKEKKIK ELQDNVAAVN FTPSSKHGKM LMAKCRTLQE ENEEIGAMAS EGKIHELGMK IAVLKTRNNE LRNQFNELYK HMDGLTNDVE RSNEMVAILQ
301: DELETKDVEL RRLKEMLAQK EATDENKIPQ ENDVAGDDIV AAAESQPIKV ET
Best Arabidopsis Sequence Match ( AT3G54170.1 )
(BLAST)
001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
Arabidopsis Description
FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.