Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plasma membrane 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7D01G234600.1 | Wheat | nucleus | 86.65 | 86.65 |
TraesCS7A01G234600.1 | Wheat | nucleus | 86.36 | 86.36 |
TraesCS7B01G132800.1 | Wheat | nucleus | 85.8 | 85.07 |
GSMUA_Achr6P08880_001 | Banana | nucleus | 73.3 | 73.09 |
VIT_17s0000g08940.t01 | Wine grape | nucleus | 68.47 | 70.06 |
EES04471 | Sorghum | nucleus | 71.88 | 68.56 |
Zm00001d015194_P001 | Maize | nucleus | 71.31 | 67.84 |
HORVU7Hr1G048110.2 | Barley | plastid | 84.94 | 65.86 |
KRH57111 | Soybean | nucleus | 63.35 | 65.78 |
PGSC0003DMT400046635 | Potato | nucleus | 62.78 | 64.62 |
KRH03247 | Soybean | nucleus | 62.78 | 64.43 |
Solyc03g112520.2.1 | Tomato | nucleus | 62.5 | 64.33 |
CDX73501 | Canola | nucleus | 57.95 | 63.16 |
CDX78214 | Canola | nucleus | 57.39 | 62.35 |
AT3G54170.1 | Thale cress | nucleus | 58.24 | 62.12 |
KRH54345 | Soybean | nucleus | 59.66 | 61.22 |
CDX67592 | Canola | nucleus | 59.38 | 60.76 |
KRH63594 | Soybean | nucleus | 60.51 | 60.17 |
CDY07554 | Canola | nucleus | 58.81 | 60.0 |
Bra007052.1-P | Field mustard | endoplasmic reticulum | 57.39 | 58.05 |
Bra003174.1-P | Field mustard | endoplasmic reticulum, nucleus | 42.05 | 49.83 |
CDX67590 | Canola | nucleus | 25.57 | 40.18 |
Bra003173.1-P | Field mustard | nucleus | 25.0 | 39.46 |
CDY51583 | Canola | nucleus | 25.0 | 38.94 |
Protein Annotations
MapMan:16.5.1.1.3 | EntrezGene:4341029 | EMBL:AK242820 | UniProt:B7F9Q5 | ProteinID:BAS97763.1 | ncoils:Coil |
ProteinID:EEE65709.1 | GO:GO:0000381 | GO:GO:0001510 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0010073 | GO:GO:0043621 | GO:GO:0080009 |
EnsemblPlantsGene:Os06g0474200 | EnsemblPlants:Os06t0474200-01 | PFAM:PF17098 | PANTHER:PTHR15217 | UniParc:UPI000188AFE3 | InterPro:WTAP |
InterPro:WTAP/Mum2 | RefSeq:XP_015644314.1 | SEG:seg | : | : | : |
Description
SKIP interacting protein 2, SKIPa-interacting protein 2, SKIPa-interacting protein 2Similar to SKIP interacting protein 2. (Os06t0474200-01)
Coordinates
chr6:-:15863304..15872695
Molecular Weight (calculated)
39359.4 Da
IEP (calculated)
4.836
GRAVY (calculated)
-0.773
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSPSPRLD EEDAFGRDFN SSPSPTAPPA RSGEKRPFGD LDDDDEDVFA SKKGKTKVEE SAPGAATGMI LSLRESLQNC KDNLASCQVE REAAKSEVQK
101: WHSAFQNIPA VPAGTNPDPV SVVSYLNNLK SSEESLKEQL EKAKKREAAF IVTFAKREQE IAELKSAVRD LKTQLRPPSM QTRRLLLDPA IHEEFTRLKN
201: LVEEKEKKIK ELQDNVAAVN FTPSSKHGKM LMAKCRTLQE ENEEIGAMAS EGKIHELGMK IAVLKTRNNE LRNQFNELYK HMDGLTNDVE RSNEMVAILQ
301: DELETKDVEL RRLKEMLAQK EATDENKIPQ ENDVAGDDIV AAAESQPIKV ET
101: WHSAFQNIPA VPAGTNPDPV SVVSYLNNLK SSEESLKEQL EKAKKREAAF IVTFAKREQE IAELKSAVRD LKTQLRPPSM QTRRLLLDPA IHEEFTRLKN
201: LVEEKEKKIK ELQDNVAAVN FTPSSKHGKM LMAKCRTLQE ENEEIGAMAS EGKIHELGMK IAVLKTRNNE LRNQFNELYK HMDGLTNDVE RSNEMVAILQ
301: DELETKDVEL RRLKEMLAQK EATDENKIPQ ENDVAGDDIV AAAESQPIKV ET
001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
Arabidopsis Description
FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.