Factsheet for VIT_17s0000g08940.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g02400.t01
VIT_03s0017g01060.t01
VIT_05s0020g00780.t01
VIT_17s0000g08940.t01
VIT_18s0001g13980.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54170.1	VIT_18s0001g13980.t01	AT1G19830.1	21798944
AT3G54170.1	VIT_05s0020g00780.t01	AT1G54770.1	21798944
AT3G54170.1	VIT_17s0000g08940.t01	AT3G54170.1	21798944
AT3G54170.1	VIT_02s0025g02400.t01	AT4G10760.1	18505803
AT3G54170.1	VIT_03s0017g01060.t01	AT5G64350.1	9807817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03247	Soybean	nucleus	75.0	75.22
KRH57111	Soybean	nucleus	73.55	74.63
PGSC0003DMT400046635	Potato	nucleus	73.26	73.68
Solyc03g112520.2.1	Tomato	nucleus	71.8	72.22
KRH54345	Soybean	nucleus	70.93	71.14
KRH63594	Soybean	nucleus	71.51	69.49
GSMUA_Achr6P08880_001	Banana	nucleus	70.93	69.12
AT3G54170.1	Thale cress	nucleus	65.99	68.79
TraesCS7A01G234600.1	Wheat	nucleus	70.06	68.47
Os06t0474200-01	Rice	nucleus	70.06	68.47
TraesCS7D01G234600.1	Wheat	nucleus	70.06	68.47
TraesCS7B01G132800.1	Wheat	nucleus	69.77	67.61
CDX67592	Canola	nucleus	65.99	65.99
CDX73501	Canola	nucleus	61.92	65.94
CDY07554	Canola	nucleus	65.7	65.51
CDX78214	Canola	nucleus	60.76	64.51
Bra007052.1-P	Field mustard	endoplasmic reticulum	60.47	59.77
EES04471	Sorghum	nucleus	63.95	59.62
Zm00001d015194_P001	Maize	nucleus	62.5	58.11
Bra003174.1-P	Field mustard	endoplasmic reticulum, nucleus	47.09	54.55
HORVU7Hr1G048110.2	Barley	plastid	69.48	52.64
CDX67590	Canola	nucleus	27.62	42.41
Bra003173.1-P	Field mustard	nucleus	27.03	41.7
CDY51583	Canola	nucleus	26.74	40.71

Protein Annotations

EntrezGene:100246679	wikigene:100246679	MapMan:16.5.1.1.3	ProteinID:CBI14980	ProteinID:CBI14980.3	ncoils:Coil
UniProt:D7SHM0	EMBL:FN594950	GO:GO:0000381	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0080009
EntrezGene:LOC100246679	wikigene:LOC100246679	PFAM:PF17098	PANTHER:PTHR15217	UniParc:UPI00015C8B24	ArrayExpress:VIT_17s0000g08940
EnsemblPlantsGene:VIT_17s0000g08940	EnsemblPlants:VIT_17s0000g08940.t01	unigene:Vvi.5473	InterPro:WTAP	InterPro:WTAP/Mum2	RefSeq:XP_002281490
RefSeq:XP_002281490.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:+:10459788..10483349

Molecular Weight (calculated)

38759.7 Da

IEP (calculated)

4.698

GRAVY (calculated)

-0.809

Length

344 amino acids

Sequence
(BLAST)

001: MSMASLPHID DDDDFGGDFS GGHNGRRSGN KRGFGDLEDD EDDIFSNKKG SFKLEETAPG VATGMILSLR ESLQNCKDTL ATCQTELEAA RSEIQKWHSS
101: FQNDSFIPAG TSLEPKLVVN YLQTLKSSEE SLREQLEKAK KKEAAFIVTF AKREQEIAEL KSAVRDLKAQ LKPPSMQARR LLLDPAIHEE FTRLKNLVEE
201: KEKKVKELQD NVAAVNFTPQ SKMGKMLMAK CRTLQEENEE IGNIASEGKM HELTMKLALQ KSQNAELRSQ FEGLYKHMEG LTNDVEKSNE MVLILQEQLE
301: EKDSELKRLK EELEQKTQME AENNDSASDK KVSDDATIPV EDGN

Best Arabidopsis Sequence Match ( AT3G54170.1 )
(BLAST)

001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE

Arabidopsis Description

FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.