Factsheet for VIT_18s0001g13980.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g00950.t01	Wine grape	mitochondrion	87.5	87.5
KRH61056	Soybean	mitochondrion	80.77	84.0
KRH51719	Soybean	mitochondrion	80.77	84.0
GSMUA_Achr1P02500_001	Banana	mitochondrion	76.92	80.81
GSMUA_Achr5P11350_001	Banana	mitochondrion	75.96	80.61
Bra003746.1-P	Field mustard	mitochondrion	83.65	80.56
CDX68122	Canola	mitochondrion	83.65	80.56
VIT_04s0023g03230.t01	Wine grape	mitochondrion	79.81	79.81
AT1G75580.1	Thale cress	mitochondrion	82.69	79.63
Solyc04g081270.1.1	Tomato	mitochondrion	82.69	79.63
CDX85905	Canola	mitochondrion	82.69	79.63
Bra008207.1-P	Field mustard	cytosol, mitochondrion	72.12	78.95
GSMUA_Achr11P...	Banana	mitochondrion	77.88	78.64
CDY47511	Canola	mitochondrion	80.77	77.78
CDY13560	Canola	mitochondrion	80.77	77.78
CDY39041	Canola	mitochondrion	79.81	76.85
Bra015832.1-P	Field mustard	mitochondrion	79.81	76.85
PGSC0003DMT400009665	Potato	mitochondrion	79.81	76.85
CDX73181	Canola	mitochondrion	79.81	76.85
GSMUA_Achr3P11290_001	Banana	mitochondrion	73.08	74.51
GSMUA_Achr1P19860_001	Banana	mitochondrion	73.08	71.7
GSMUA_Achr7P06520_001	Banana	mitochondrion	69.23	69.9
CDY44482	Canola	mitochondrion	75.0	69.03
GSMUA_Achr1P06110_001	Banana	mitochondrion	65.38	68.69
AT1G19830.1	Thale cress	mitochondrion	76.92	68.38
CDY55152	Canola	cytosol, mitochondrion	73.08	67.26
Bra025770.1-P	Field mustard	cytosol, mitochondrion	72.12	66.37
CDY29398	Canola	cytosol, mitochondrion	71.15	65.49
Os02t0445600-01	Rice	cytosol, mitochondrion	56.73	60.82
Zm00001d051802_P001	Maize	mitochondrion	61.54	55.65
Os02t0445100-01	Rice	mitochondrion	50.96	55.21
Os06t0137400-00	Rice	mitochondrion	61.54	53.78
KXG19242	Sorghum	mitochondrion	63.46	51.97
TraesCS4A01G375500.1	Wheat	mitochondrion	57.69	50.42
Zm00001d045423_P001	Maize	cytosol	60.58	50.4
TraesCS7A01G077000.1	Wheat	mitochondrion	57.69	50.0
TraesCS7D01G072600.1	Wheat	mitochondrion	57.69	48.0
VIT_07s0130g00100.t01	Wine grape	cytosol	35.58	46.25
Zm00001d004578_P001	Maize	plastid	50.0	41.94
Zm00001d012222_P001	Maize	cytosol	53.85	37.33
Zm00001d051962_P001	Maize	cytosol	54.81	35.62
HORVU7Hr1G017790.1	Barley	extracellular, mitochondrion, plastid	56.73	32.78
VIT_08s0040g01670.t01	Wine grape	mitochondrion	37.5	31.45
Zm00001d008420_P001	Maize	cytosol	42.31	18.72
Zm00001d021237_P001	Maize	cytosol	42.31	15.49
Zm00001d033729_P001	Maize	nucleus	50.0	14.21
Zm00001d027753_P001	Maize	nucleus	42.31	10.4
Zm00001d053311_P001	Maize	nucleus	23.08	7.02

Protein Annotations

EntrezGene:100247221	wikigene:100247221	MapMan:35.1	UniProt:A5CAI9	EMBL:AM488214	ProteinID:CAN73226
ProteinID:CAN73226.1	ProteinID:CCB46023	ProteinID:CCB46023.1	EMBL:FN595227	GO:GO:0008150	GO:GO:0009719
GO:GO:0009733	EntrezGene:LOC100247221	wikigene:LOC100247221	PFAM:PF02519	PANTHER:PTHR31374	PANTHER:PTHR31374:SF2
InterPro:SAUR_fam	UniParc:UPI0001522953	ArrayExpress:VIT_18s0001g13980	EnsemblPlantsGene:VIT_18s0001g13980	EnsemblPlants:VIT_18s0001g13980.t01	RefSeq:XP_003634383
RefSeq:XP_003634383.1	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:11987475..11987922

Molecular Weight (calculated)

11750.3 Da

IEP (calculated)

7.415

GRAVY (calculated)

-0.257

Length

104 amino acids

Sequence
(BLAST)

001: MALGKSNKLS QTAVLKQILK RCSSLGKKQG YDQEGLPLDV PKGHFAVYVG ENRTRYIVPI SFLTRPEFQS LLQQAEEEFG FDHEMGLTIP CEEVVFQSLT
101: SMLR

Best Arabidopsis Sequence Match ( AT1G75580.1 )
(BLAST)

001: MAMKKANKLT QTAMIKQILK RCSSLGKKQS NVYGEDENGS PLNVPKGHFV VYVGENRVRY VVPISFLTRP EFQLLLQQAE EEFGFDHDMG LTIPCEEVVF
101: RSLTSMLR

Arabidopsis Description

At1g75580 [Source:UniProtKB/TrEMBL;Acc:Q9LR00]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.