Factsheet for VIT_08s0040g01670.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67711	Soybean	cytosol	58.06	67.92
PGSC0003DMT400055533	Potato	cytosol	65.32	66.94
Solyc09g007970.1.1	Tomato	cytosol	65.32	66.94
KRG95997	Soybean	mitochondrion	66.13	65.6
KRH19939	Soybean	cytosol	64.52	65.04
Solyc10g086200.1.1	Tomato	cytosol	63.71	64.23
KRH32539	Soybean	cytosol	64.52	64.0
PGSC0003DMT400080544	Potato	cytosol	62.1	63.11
AT2G37030.1	Thale cress	cytosol	55.65	55.65
Bra005223.1-P	Field mustard	cytosol	55.65	55.2
CDX70314	Canola	mitochondrion	47.58	55.14
Bra009535.1-P	Field mustard	mitochondrion	47.58	55.14
CDY10388	Canola	mitochondrion	46.77	54.21
CDX91329	Canola	cytosol	54.03	53.6
CDY18466	Canola	cytosol, mitochondrion	50.81	53.39
Bra017211.1-P	Field mustard	mitochondrion	50.81	53.39
CDX74993	Canola	cytosol	53.23	52.8
CDY46750	Canola	cytosol	52.42	52.42
Bra023093.1-P	Field mustard	cytosol	52.42	52.42
Bra006984.1-P	Field mustard	cytosol	54.84	52.31
CDX78160	Canola	cytosol	54.84	52.31
CDY13307	Canola	cytosol	54.84	51.91
AT5G03310.1	Thale cress	mitochondrion	47.58	51.75
CDX79712	Canola	cytosol	51.61	51.61
CDX73568	Canola	cytosol	54.03	51.54
CDX67565	Canola	cytosol	54.03	51.15
Bra003125.1-P	Field mustard	cytosol	54.03	51.15
CDY62892	Canola	mitochondrion	45.16	50.45
Bra028841.1-P	Field mustard	mitochondrion	45.16	50.45
CDY44355	Canola	mitochondrion	44.35	49.55
AT3G53250.2	Thale cress	endoplasmic reticulum, extracellular	52.42	41.94
Zm00001d003018_P001	Maize	mitochondrion	42.74	41.73
OQU81983	Sorghum	mitochondrion	41.94	41.27
Os04t0517900-01	Rice	mitochondrion	42.74	41.09
VIT_18s0001g13980.t01	Wine grape	mitochondrion	31.45	37.5
VIT_03s0038g00950.t01	Wine grape	mitochondrion	30.65	36.54
VIT_04s0023g03230.t01	Wine grape	mitochondrion	29.84	35.58
VIT_07s0130g00100.t01	Wine grape	cytosol	22.58	35.0
TraesCS2B01G398600.1	Wheat	cytosol, plastid	39.52	32.45
TraesCS2D01G377800.1	Wheat	plastid	39.52	31.61
HORVU2Hr1G089400.1	Barley	plastid	39.52	31.21
TraesCS2A01G381300.1	Wheat	plastid	38.71	31.17
GSMUA_Achr1P09150_001	Banana	nucleus	45.16	29.32

Protein Annotations

ArrayExpress:VIT_08s0040g01670	EMBL:FN596008	EnsemblPlants:VIT_08s0040g01670.t01	EnsemblPlantsGene:VIT_08s0040g01670	EntrezGene:100253355	EntrezGene:LOC100253355
GO:GO:0008150	GO:GO:0009719	GO:GO:0009733	InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF9
PFAM:PF02519	ProteinID:CBI32752	ProteinID:CBI32752.3	RefSeq:XP_002281876	RefSeq:XP_002281876.2	UniParc:UPI0001983B7B
UniProt:D7TQN2	wikigene:100253355	wikigene:LOC100253355	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr8:+:12797219..12797604

Molecular Weight (calculated)

14245.4 Da

IEP (calculated)

8.582

GRAVY (calculated)

-0.114

Length

124 amino acids

Sequence
(BLAST)

001: MRGKFLRACL EKWRRMGSRV IPSAGCDYCC QWALWPSMHE GDSIPRDVPK GHLVVYVGEN YTRFVIKITL LKHPLFKALL DQARDEYDFT AASKLCIPCD
101: ENIFLSVVRC ASSPQDRRSF SLCL

Best Arabidopsis Sequence Match ( AT2G37030.1 )
(BLAST)

001: MKSKFIKSCE KKLKKMTSKV IIPCASCESC YERICWAFKK EAEVIPRDVP KGHLVVYVGE EYKRFVININ LLKHPLFQAL LDQAQDAYGF SADSRLWIPC
101: NESTFLDVVR CAGAPQHQNN CICI

Arabidopsis Description

Auxin-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q9SJK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.