Factsheet for Solyc10g086200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080544	Potato	cytosol	96.75	97.54
Solyc09g007970.1.1	Tomato	cytosol	75.61	76.86
VIT_08s0040g01670.t01	Wine grape	mitochondrion	64.23	63.71
KRH67711	Soybean	cytosol	47.97	55.66
AT2G37030.1	Thale cress	cytosol	54.47	54.03
KRH19939	Soybean	cytosol	53.66	53.66
KRH32539	Soybean	cytosol	53.66	52.8
CDY13307	Canola	cytosol	56.1	52.67
Bra006984.1-P	Field mustard	cytosol	55.28	52.31
CDX78160	Canola	cytosol	55.28	52.31
Bra003125.1-P	Field mustard	cytosol	55.28	51.91
CDX67565	Canola	cytosol	55.28	51.91
CDX73568	Canola	cytosol	54.47	51.54
CDX91329	Canola	cytosol	52.03	51.2
KRG95997	Soybean	mitochondrion	52.03	51.2
CDY18466	Canola	cytosol, mitochondrion	48.78	50.85
Bra017211.1-P	Field mustard	mitochondrion	48.78	50.85
CDX74993	Canola	cytosol	51.22	50.4
Bra005223.1-P	Field mustard	cytosol	51.22	50.4
CDY46750	Canola	cytosol	50.41	50.0
Bra023093.1-P	Field mustard	cytosol	50.41	50.0
CDX79712	Canola	cytosol	49.59	49.19
CDX70314	Canola	mitochondrion	40.65	46.73
Bra009535.1-P	Field mustard	mitochondrion	40.65	46.73
CDY10388	Canola	mitochondrion	39.84	45.79
AT5G03310.1	Thale cress	mitochondrion	41.46	44.74
CDY62892	Canola	mitochondrion	39.84	44.14
Bra028841.1-P	Field mustard	mitochondrion	39.84	44.14
CDY44355	Canola	mitochondrion	39.02	43.24
AT3G53250.2	Thale cress	endoplasmic reticulum, extracellular	52.85	41.94
Solyc03g033590.1.1	Tomato	mitochondrion	30.89	38.38
Solyc02g062230.1.1	Tomato	cytosol, mitochondrion	29.27	37.5
Solyc01g110580.2.1	Tomato	mitochondrion	27.64	35.42
Os04t0517900-01	Rice	mitochondrion	35.77	34.11
Solyc04g081270.1.1	Tomato	mitochondrion	29.27	33.33
Solyc02g084010.1.1	Tomato	mitochondrion	27.64	33.33
OQU81983	Sorghum	mitochondrion	33.33	32.54
Solyc06g065220.1.1	Tomato	cytosol	25.2	31.96
Solyc01g110570.2.1	Tomato	mitochondrion	26.83	31.43
Zm00001d003018_P001	Maize	mitochondrion	31.71	30.71
Solyc01g110610.2.1	Tomato	cytosol, mitochondrion, nucleus	26.83	30.56
Solyc01g110620.1.1	Tomato	mitochondrion	26.02	30.48
Solyc01g110590.2.1	Tomato	mitochondrion	26.02	30.48
Solyc10g054720.1.1	Tomato	mitochondrion	26.83	30.28
TraesCS2B01G398600.1	Wheat	cytosol, plastid	31.71	25.83
TraesCS2D01G377800.1	Wheat	plastid	31.71	25.16
TraesCS2A01G381300.1	Wheat	plastid	30.89	24.68
HORVU2Hr1G089400.1	Barley	plastid	30.08	23.57
GSMUA_Achr1P09150_001	Banana	nucleus	36.59	23.56

Protein Annotations

EnsemblPlants:Solyc10g086200.1.1	EnsemblPlantsGene:Solyc10g086200.1	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733	InterPro:SAUR_fam
PANTHER:PTHR31374	PANTHER:PTHR31374:SF9	PFAM:PF02519	UniParc:UPI000276935E	UniProt:K4D453	MapMan:35.2

Description

No Description!

Coordinates

chr10:-:65110113..65110484

Molecular Weight (calculated)

14378.7 Da

IEP (calculated)

9.141

GRAVY (calculated)

-0.244

Length

123 amino acids

Sequence
(BLAST)

001: MMDGKFVKAC QKMGTKVITC ATNCDKCCKW TKWPFVQEDN NIPRDVPKGH LVVYVGKYQK RFVIKITLLK HPLFKALLDQ AQEDFYDYNH VESKLWIPCD
101: ENIFVSVIRC ATSPKNRRIS ICF

Best Arabidopsis Sequence Match ( AT2G37030.1 )
(BLAST)

001: MKSKFIKSCE KKLKKMTSKV IIPCASCESC YERICWAFKK EAEVIPRDVP KGHLVVYVGE EYKRFVININ LLKHPLFQAL LDQAQDAYGF SADSRLWIPC
101: NESTFLDVVR CAGAPQHQNN CICI

Arabidopsis Description

Auxin-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q9SJK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.