Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18466 | Canola | cytosol, mitochondrion | 78.23 | 82.2 |
| Bra017211.1-P | Field mustard | mitochondrion | 78.23 | 82.2 |
| CDY46750 | Canola | cytosol | 80.65 | 80.65 |
| Bra023093.1-P | Field mustard | cytosol | 80.65 | 80.65 |
| CDX74993 | Canola | cytosol | 80.65 | 80.0 |
| Bra005223.1-P | Field mustard | cytosol | 79.84 | 79.2 |
| CDX79712 | Canola | cytosol | 78.23 | 78.23 |
| CDX91329 | Canola | cytosol | 78.23 | 77.6 |
| Solyc09g007970.1.1 | Tomato | cytosol | 57.26 | 58.68 |
| PGSC0003DMT400055533 | Potato | cytosol | 57.26 | 58.68 |
| KRH19939 | Soybean | cytosol | 57.26 | 57.72 |
| KRH32539 | Soybean | cytosol | 57.26 | 56.8 |
| VIT_08s0040g01670.t01 | Wine grape | mitochondrion | 55.65 | 55.65 |
| Solyc10g086200.1.1 | Tomato | cytosol | 54.03 | 54.47 |
| AT3G53250.2 | Thale cress | endoplasmic reticulum, extracellular | 67.74 | 54.19 |
| PGSC0003DMT400080544 | Potato | cytosol | 53.23 | 54.1 |
| KRH67711 | Soybean | cytosol | 45.97 | 53.77 |
| KRG95997 | Soybean | mitochondrion | 50.81 | 50.4 |
| AT5G03310.1 | Thale cress | mitochondrion | 45.97 | 50.0 |
| OQU81983 | Sorghum | mitochondrion | 42.74 | 42.06 |
| Zm00001d003018_P001 | Maize | mitochondrion | 39.52 | 38.58 |
| Os04t0517900-01 | Rice | mitochondrion | 38.71 | 37.21 |
| AT4G38860.1 | Thale cress | mitochondrion | 30.65 | 36.19 |
| AT5G66260.1 | Thale cress | cytosol | 27.42 | 34.34 |
| AT1G75580.1 | Thale cress | mitochondrion | 29.84 | 34.26 |
| AT2G21220.1 | Thale cress | mitochondrion | 28.23 | 33.65 |
| AT4G34760.1 | Thale cress | mitochondrion | 29.03 | 33.64 |
| AT1G19830.1 | Thale cress | mitochondrion | 29.84 | 31.62 |
| AT3G51200.1 | Thale cress | nucleus | 26.61 | 31.13 |
| AT4G36110.1 | Thale cress | mitochondrion | 25.81 | 30.77 |
| AT2G16580.1 | Thale cress | mitochondrion | 26.61 | 30.56 |
| AT2G18010.1 | Thale cress | cytosol, plastid | 27.42 | 30.36 |
| AT4G09530.1 | Thale cress | cytosol | 24.19 | 29.13 |
| TraesCS2B01G398600.1 | Wheat | cytosol, plastid | 33.87 | 27.81 |
| HORVU2Hr1G089400.1 | Barley | plastid | 34.68 | 27.39 |
| TraesCS2A01G381300.1 | Wheat | plastid | 33.87 | 27.27 |
| TraesCS2D01G377800.1 | Wheat | plastid | 32.26 | 25.81 |
| GSMUA_Achr1P09150_001 | Banana | nucleus | 34.68 | 22.51 |
Protein Annotations
| MapMan:35.2 | EntrezGene:818278 | UniProt:A0A178VP68 | ProteinID:AAD31588.1 | ProteinID:AEC09339.1 | ArrayExpress:AT2G37030 |
| EnsemblPlantsGene:AT2G37030 | RefSeq:AT2G37030 | TAIR:AT2G37030 | RefSeq:AT2G37030-TAIR-G | EnsemblPlants:AT2G37030.1 | TAIR:AT2G37030.1 |
| EMBL:DQ056570 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
| RefSeq:NP_181240.1 | ProteinID:OAP07614.1 | PFAM:PF02519 | PO:PO:0000332 | PO:PO:0006019 | PO:PO:0006040 |
| PO:PO:0009052 | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF45 | UniProt:Q9SJK4 | InterPro:SAUR_fam | UniParc:UPI00000A15AF |
Description
Auxin-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q9SJK4]
Coordinates
chr2:+:15553651..15554332
Molecular Weight (calculated)
14187.4 Da
IEP (calculated)
8.488
GRAVY (calculated)
-0.105
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSKFIKSCE KKLKKMTSKV IIPCASCESC YERICWAFKK EAEVIPRDVP KGHLVVYVGE EYKRFVININ LLKHPLFQAL LDQAQDAYGF SADSRLWIPC
101: NESTFLDVVR CAGAPQHQNN CICI
101: NESTFLDVVR CAGAPQHQNN CICI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.