Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05061 | Canola | cytosol | 82.52 | 86.73 |
| CDX90724 | Canola | cytosol | 82.52 | 86.73 |
| Bra000682.1-P | Field mustard | cytosol | 82.52 | 86.73 |
| KRH63924 | Soybean | cytosol | 37.86 | 49.37 |
| VIT_07s0130g00100.t01 | Wine grape | cytosol | 37.86 | 48.75 |
| KRH54020 | Soybean | cytosol | 37.86 | 48.75 |
| Solyc06g065220.1.1 | Tomato | cytosol | 42.72 | 45.36 |
| PGSC0003DMT400067154 | Potato | cytosol | 43.69 | 42.86 |
| AT1G75580.1 | Thale cress | mitochondrion | 35.92 | 34.26 |
| AT5G66260.1 | Thale cress | cytosol | 30.1 | 31.31 |
| AT4G36110.1 | Thale cress | mitochondrion | 30.1 | 29.81 |
| AT2G21220.1 | Thale cress | mitochondrion | 30.1 | 29.81 |
| AT2G16580.1 | Thale cress | mitochondrion | 31.07 | 29.63 |
| AT4G38860.1 | Thale cress | mitochondrion | 30.1 | 29.52 |
| AT4G34760.1 | Thale cress | mitochondrion | 30.1 | 28.97 |
| AT1G19830.1 | Thale cress | mitochondrion | 32.04 | 28.21 |
| AT2G18010.1 | Thale cress | cytosol, plastid | 30.1 | 27.68 |
| AT3G51200.1 | Thale cress | nucleus | 27.18 | 26.42 |
| AT2G37030.1 | Thale cress | cytosol | 29.13 | 24.19 |
| AT5G03310.1 | Thale cress | mitochondrion | 22.33 | 20.18 |
| AT3G53250.2 | Thale cress | endoplasmic reticulum, extracellular | 28.16 | 18.71 |
Protein Annotations
| MapMan:35.2 | EntrezGene:826537 | UniProt:A0A178V0W3 | ProteinID:AEE82762.1 | ArrayExpress:AT4G09530 | EnsemblPlantsGene:AT4G09530 |
| RefSeq:AT4G09530 | TAIR:AT4G09530 | RefSeq:AT4G09530-TAIR-G | EnsemblPlants:AT4G09530.1 | TAIR:AT4G09530.1 | ProteinID:CAB78076.1 |
| GO:GO:0003674 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 | RefSeq:NP_192691.1 | ProteinID:OAO98692.1 |
| PFAM:PF02519 | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF55 | UniProt:Q9M0P0 | InterPro:SAUR_fam | UniParc:UPI00000A7113 |
| SEG:seg | : | : | : | : | : |
Description
SAUR-like auxin-responsive protein family [Source:UniProtKB/TrEMBL;Acc:Q9M0P0]
Coordinates
chr4:-:6029238..6029817
Molecular Weight (calculated)
11951.2 Da
IEP (calculated)
7.235
GRAVY (calculated)
-0.633
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MPHKVIDMHF HEREEEEDTG ESRSSSRTPR GHFVVYVGTK KKLERFVIPT TFLKSPSFQK LLDNAAEEFG YAEAHRDKIV LPCDVSTFRS LVMFLTSHQD
101: KSH
101: KSH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.