Factsheet for VIT_02s0025g02400.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g08940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10760.1	VIT_17s0000g08940.t01	AT3G54170.1	18505803

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g066730.2.1	Tomato	nucleus	67.8	70.09
PGSC0003DMT400011022	Potato	cytosol, nucleus, plastid	67.67	69.96
CDY53519	Canola	mitochondrion	48.17	69.43
Bra035280.1-P	Field mustard	mitochondrion	48.3	69.36
KRH48077	Soybean	nucleus	67.8	67.98
KRH06595	Soybean	cytosol, nucleus, plastid	67.15	67.41
GSMUA_Achr11P...	Banana	nucleus	52.09	64.93
AT4G10760.1	Thale cress	cytosol	57.85	64.53
GSMUA_Achr8P11830_001	Banana	nucleus	59.69	64.23
EES07469	Sorghum	cytosol	58.77	63.6
Os02t0672600-01	Rice	nucleus	58.51	63.31
Zm00001d017566_P001	Maize	extracellular	57.98	62.93
TraesCS6B01G270600.1	Wheat	nucleus	55.76	61.21
TraesCS6A01G254900.1	Wheat	nucleus	55.89	60.83
TraesCS6D01G236200.1	Wheat	nucleus	55.63	60.54
CDX86845	Canola	nucleus	50.79	59.97
HORVU6Hr1G064940.1	Barley	mitochondrion	56.02	58.15
VIT_16s0050g00820.t01	Wine grape	nucleus	17.54	10.94

Protein Annotations

EntrezGene:100256414	wikigene:100256414	MapMan:16.5.1.1.1	ProteinID:CCB58289	ProteinID:CCB58289.1	UniProt:F6HU66
EMBL:FN596251	GO:GO:0001510	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016422
GO:GO:0016607	GO:GO:0016740	GO:GO:0032259	GO:GO:0036396	GO:GO:0080009	InterPro:IPR007757
EntrezGene:LOC100256414	wikigene:LOC100256414	InterPro:MT-A70-like	PFAM:PF05063	PFscan:PS51143	PANTHER:PTHR12829
PANTHER:PTHR12829:SF2	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI00015CCB7F	ArrayExpress:VIT_02s0025g02400	EnsemblPlantsGene:VIT_02s0025g02400
EnsemblPlants:VIT_02s0025g02400.t01	RefSeq:XP_002272937	RefSeq:XP_002272937.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:2111674..2121466

Molecular Weight (calculated)

83893.7 Da

IEP (calculated)

6.077

GRAVY (calculated)

-0.455

Length

764 amino acids

Sequence
(BLAST)

001: METQSDGKED TVVSIKDKRQ RLETRIGAQH NTQLDLLASL QTLVPDIVSS LDLSLKVVCS FNGRPFFSTP LAPPSTNPNS KVSVQSTRIS SPETARRGGS
101: VEPKPAVSND VSGDGAEKFT IDESGSPLSV VRSMVAVCLL ERVPFTAIDS SAVLRKLEND TSATAAEKAA LREMGGESGA ILAVEMALRS MAEDNGGVEL
201: EEFVMSGKSR VMVLGIDRTR LVKELPESAQ YQQQQESSSD GNQNQSLQRG GGGDVNSGGF GMGGPIPRPM PDMWMGPGDA HLSGLPPMFP GAGGPGPMLG
301: PRGGPRVMGS SMMGMPRGMG VPPLHRPPLG PNMGMSGPNA TPMKPRTEED DLKDLEALLN KKSFREMQKS KTGEELLDLI HRPTARETAV AAKFKTKGGS
401: QLKEYCSALT KEDCRRQSGS YIACEKVHFR RIIAPHTDIN LGDCSFLDTC RHMKTCKYVH YELDPTPDVP PMIMGAASLA PPKQMKPQRA EYCSEVELGE
501: PQWINCDIRT FRMDILGQFG VIMADPPWDI HMELPYGTMA DDEMRSLNVP ALQTDGLIFL WVTGRAMELG RECLELWGYK RVEEIIWVKT NQLQRIIRTG
601: RTGHWLNHSK EHCLVGIKGN PEVNRNIDTD VIVAEVRETS RKPDEMYPML ERISPRTRKL ELFARMHNTH AGWMSLGNQL NGVRLVDEGL RARFKAAYPE
701: VEVQPTSPPR TSAMELDSNT AQIRSPFPGM ESKSTAAQFA EPTAPEAAYP SEEKSITLDV EMMS

Best Arabidopsis Sequence Match ( AT4G10760.1 )
(BLAST)

001: METESDDATI TVVKDMRVRL ENRIRTQHDA HLDLLSSLQS IVPDIVPSLD LSLKLISSFT NRPFVATPPL PEPKVEKKHH PIVKLGTQLQ QLHGHDSKSM
101: LVDSNQRDAE ADGSSGSPMA LVRAMVAECL LQRVPFSPTD SSTVLRKLEN DQNARPAEKA ALRDLGGECG PILAVETALK SMAEENGSVE LEEFEVSGKP
201: RIMVLAIDRT RLLKELPESF QGNNESNRVV ETPNSIENAT VSGGGFGVSG SGNFPRPEMW GGDPNMGFRP MMNAPRGMQM MGMHHPMGIM GRPPPFPLPL
301: PLPVPSNQKL RSEEEDLKDV EALLSKKSFK EKQQSRTGEE LLDLIHRPTA KEAATAAKFK SKGGSQVKYY CRYLTKEDCR LQSGSHIACN KRHFRRLIAS
401: HTDVSLGDCS FLDTCRHMKT CKYVHYELDM ADAMMAGPDK ALKPLRADYC SEAELGEAQW INCDIRSFRM DILGTFGVVM ADPPWDIHME LPYGTMADDE
501: MRTLNVPSLQ TDGLIFLWVT GRAMELGREC LELWGYKRVE EIIWVKTNQL QRIIRTGRTG HWLNHSKEHC LVGIKGNPEV NRNIDTDVIV AEVRETSRKP
601: DEMYAMLERI MPRARKLELF ARMHNAHAGW LSLGNQLNGV RLINEGLRAR FKASYPEIDV QPPSPPRASA METDNEPMAI DSITA

Arabidopsis Description

MTAN6-adenosine-methyltransferase MT-A70-like [Source:UniProtKB/Swiss-Prot;Acc:O82486]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.