Factsheet for GSMUA_Achr6P08880_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P02500_001
GSMUA_Achr1P06110_001
GSMUA_Achr1P19860_001
GSMUA_Achr3P11290_001
GSMUA_Achr5P02030_001
GSMUA_Achr5P05550_001
GSMUA_Achr5P11350_001
GSMUA_Achr6P08880_001
GSMUA_Achr7P06520_001
GSMUA_Achr8P11830_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54170.1	GSMUA_Achr11P...	AT1G19830.1	21798944
AT3G54170.1	GSMUA_Achr1P02500_001	AT1G19830.1	21798944
AT3G54170.1	GSMUA_Achr1P06110_001	AT1G19830.1	21798944
AT3G54170.1	GSMUA_Achr1P19860_001	AT1G19830.1	21798944
AT3G54170.1	GSMUA_Achr3P11290_001	AT1G19830.1	21798944
AT3G54170.1	GSMUA_Achr5P11350_001	AT1G19830.1	21798944
AT3G54170.1	GSMUA_Achr7P06520_001	AT1G19830.1	21798944
AT3G54170.1	GSMUA_Achr5P02030_001	AT1G54770.1	21798944
AT3G54170.1	GSMUA_Achr6P08880_001	AT3G54170.1	21798944
AT3G54170.1	GSMUA_Achr11P...	AT4G10760.1	18505803
AT3G54170.1	GSMUA_Achr8P11830_001	AT4G10760.1	18505803
AT3G54170.1	GSMUA_Achr5P05550_001	AT5G64350.1	9807817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0474200-01	Rice	nucleus	73.09	73.3
TraesCS7D01G234600.1	Wheat	nucleus	72.8	73.01
TraesCS7A01G234600.1	Wheat	nucleus	72.52	72.73
TraesCS7B01G132800.1	Wheat	nucleus	72.52	72.11
VIT_17s0000g08940.t01	Wine grape	nucleus	69.12	70.93
KRH57111	Soybean	nucleus	63.74	66.37
PGSC0003DMT400046635	Potato	nucleus	63.74	65.79
KRH03247	Soybean	nucleus	63.74	65.6
Solyc03g112520.2.1	Tomato	nucleus	63.46	65.5
EES04471	Sorghum	nucleus	66.86	63.96
KRH54345	Soybean	nucleus	61.76	63.56
KRH63594	Soybean	nucleus	63.17	62.99
CDX78214	Canola	nucleus	57.51	62.65
CDX73501	Canola	nucleus	57.22	62.54
AT3G54170.1	Thale cress	nucleus	58.07	62.12
Zm00001d015194_P001	Maize	nucleus	64.59	61.62
CDY07554	Canola	nucleus	59.21	60.58
CDX67592	Canola	nucleus	58.92	60.47
Bra007052.1-P	Field mustard	endoplasmic reticulum	57.22	58.05
HORVU7Hr1G048110.2	Barley	plastid	72.24	56.17
Bra003174.1-P	Field mustard	endoplasmic reticulum, nucleus	43.06	51.18
CDX67590	Canola	nucleus	26.35	41.52
Bra003173.1-P	Field mustard	nucleus	25.78	40.81
CDY51583	Canola	nucleus	25.21	39.38

Protein Annotations

MapMan:16.5.1.1.3	ncoils:Coil	GO:GO:0000381	GO:GO:0001510	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0010073	GO:GO:0043621
GO:GO:0080009	EnsemblPlantsGene:GSMUA_Achr6G08880_001	EnsemblPlants:GSMUA_Achr6P08880_001	EnsemblPlants:GSMUA_Achr6T08880_001	UniProt:M0T5D7	PFAM:PF17098
PANTHER:PTHR15217	UniParc:UPI00029678BF	InterPro:WTAP	InterPro:WTAP/Mum2	SEG:seg	:

Description

FKBP12-interacting protein of 37 kDa [Source:GMGC_GENE;Acc:GSMUA_Achr6G08880_001]

Coordinates

chr6:+:5875398..5884363

Molecular Weight (calculated)

39268.2 Da

IEP (calculated)

4.544

GRAVY (calculated)

-0.788

Length

353 amino acids

Sequence
(BLAST)

001: MSTTGEASGF FSMASDLHLD DEDDFGGDVP GSQSSAKRSG GKRTFGDLDE EEDDVFGPKK GKPKVEESGP GMTTGMILSL RESLQNCKDN LATCQEELEA
101: AKSEIQKWHS AFQNGPATPA GTSPEPGLVL TYLQNLKSSE ESLKEQLEKA KKKEAAFIVT FAKKEQEIAD LKSAVRDLKT QLRPPSMQTR KLLLDPAIHE
201: EFTRLKNLVE EKEKKIKELQ DNLAAVNFTA SSKLGKMLMA KCRTLQEENE EIGAMASEGK IHELGMKIVV LKSQNAELRN QFDALYKHME GLTNEMERSN
301: EMVYILQERL EAKDCELRNL KELLTQKEAA EERDDDDGDK EEANEGNSAD VEA

Best Arabidopsis Sequence Match ( AT3G54170.1 )
(BLAST)

001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE

Arabidopsis Description

FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.