Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G234600.1 | Wheat | nucleus | 99.15 | 99.15 |
| TraesCS7B01G132800.1 | Wheat | nucleus | 99.43 | 98.59 |
| Os06t0474200-01 | Rice | nucleus | 86.36 | 86.36 |
| HORVU7Hr1G048110.2 | Barley | plastid | 98.3 | 76.21 |
| GSMUA_Achr6P08880_001 | Banana | nucleus | 72.73 | 72.52 |
| EES04471 | Sorghum | nucleus | 73.58 | 70.19 |
| VIT_17s0000g08940.t01 | Wine grape | nucleus | 68.47 | 70.06 |
| Zm00001d015194_P001 | Maize | nucleus | 71.88 | 68.38 |
| KRH57111 | Soybean | nucleus | 62.78 | 65.19 |
| PGSC0003DMT400046635 | Potato | nucleus | 63.07 | 64.91 |
| Solyc03g112520.2.1 | Tomato | nucleus | 62.78 | 64.62 |
| KRH03247 | Soybean | nucleus | 62.78 | 64.43 |
| CDX73501 | Canola | nucleus | 58.52 | 63.78 |
| AT3G54170.1 | Thale cress | nucleus | 59.38 | 63.33 |
| KRH54345 | Soybean | nucleus | 61.65 | 63.27 |
| CDX78214 | Canola | nucleus | 57.67 | 62.65 |
| CDX67592 | Canola | nucleus | 60.51 | 61.92 |
| KRH63594 | Soybean | nucleus | 61.36 | 61.02 |
| CDY07554 | Canola | nucleus | 59.38 | 60.58 |
| Bra007052.1-P | Field mustard | endoplasmic reticulum | 57.39 | 58.05 |
| Bra003174.1-P | Field mustard | endoplasmic reticulum, nucleus | 43.18 | 51.18 |
| CDX67590 | Canola | nucleus | 25.57 | 40.18 |
| Bra003173.1-P | Field mustard | nucleus | 25.0 | 39.46 |
| CDY51583 | Canola | nucleus | 24.43 | 38.05 |
Protein Annotations
| MapMan:16.5.1.1.3 | ncoils:Coil | GO:GO:0000381 | GO:GO:0001510 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0010073 | GO:GO:0043621 |
| GO:GO:0080009 | PFAM:PF17098 | PANTHER:PTHR15217 | EnsemblPlantsGene:TraesCS7A01G234600 | EnsemblPlants:TraesCS7A01G234600.1 | InterPro:WTAP |
| InterPro:WTAP/Mum2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:206709213..206714971
Molecular Weight (calculated)
39384.2 Da
IEP (calculated)
4.640
GRAVY (calculated)
-0.812
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPPSPRLD EDDTFGRDFN ASPSRNAAPA RSGEKRQFGD LDDDEDDVFA SKKGKTKVEE SAPGAATGMI LSLRESLQTC KENLESNQVE LEAAKSEIQK
101: WHSAFQNIPA VPAGTNPEPV SVVTYLNNLK SSEESLKEQL EKAKKREAAF IVTFAKREQE IAELKSAVRD LKTQLRPPSM QTRRLLLDPA IHEEFTRLKN
201: LAEEKEKKIK ELQENVAAVN FTPSSKHGKM LMAKCRTLQE ENEEIGAMAS EGKIHELGMK IAVLKTQNNE LRNQFDGLYK HMDGLTNDVE RSNEMVSILQ
301: EELEAKDVEL ARLKEMLSQK EATEDDAVVE EREEAANDMN ASSDPQPIKA ES
101: WHSAFQNIPA VPAGTNPEPV SVVTYLNNLK SSEESLKEQL EKAKKREAAF IVTFAKREQE IAELKSAVRD LKTQLRPPSM QTRRLLLDPA IHEEFTRLKN
201: LAEEKEKKIK ELQENVAAVN FTPSSKHGKM LMAKCRTLQE ENEEIGAMAS EGKIHELGMK IAVLKTQNNE LRNQFDGLYK HMDGLTNDVE RSNEMVSILQ
301: EELEAKDVEL ARLKEMLSQK EATEDDAVVE EREEAANDMN ASSDPQPIKA ES
001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
Arabidopsis Description
FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.