Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G234600.1 | |
| TraesCS7B01G132800.1 | |
| TraesCS7D01G234600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G64350.1 | TraesCS7A01G234600.1 | AT3G54170.1 | 9807817 |
| AT5G64350.1 | TraesCS7B01G132800.1 | AT3G54170.1 | 9807817 |
| AT5G64350.1 | TraesCS7D01G234600.1 | AT3G54170.1 | 9807817 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G314100.1 | Wheat | plastid | 95.38 | 96.37 |
| TraesCS6D01G293400.1 | Wheat | cytosol | 95.38 | 95.38 |
| EES07562 | Sorghum | cytosol, mitochondrion, plastid | 51.79 | 90.18 |
| Zm00001d018134_P001 | Maize | mitochondrion | 50.26 | 87.5 |
| Os02t0760300-01 | Rice | extracellular | 49.23 | 85.71 |
| Solyc01g105710.2.1 | Tomato | extracellular | 48.21 | 83.93 |
| PGSC0003DMT400083778 | Potato | cytosol | 48.21 | 83.93 |
| VIT_03s0017g01060.t01 | Wine grape | cytosol, mitochondrion, plastid | 46.15 | 80.36 |
| CDY46798 | Canola | cytosol | 30.26 | 79.73 |
| KRH21780 | Soybean | cytosol, mitochondrion, plastid | 45.64 | 79.46 |
| Bra037775.1-P | Field mustard | cytosol, mitochondrion, plastid | 45.13 | 78.57 |
| AT5G64350.1 | Thale cress | cytosol, mitochondrion, plastid | 44.1 | 76.79 |
| CDX84517 | Canola | cytosol, mitochondrion, plastid | 44.1 | 76.79 |
| Bra024287.1-P | Field mustard | cytosol, mitochondrion, plastid | 42.56 | 74.11 |
| CDY58272 | Canola | cytosol, mitochondrion, plastid | 42.56 | 74.11 |
| CDX81222 | Canola | cytosol, mitochondrion, plastid | 42.05 | 73.21 |
| HORVU6Hr1G077340.1 | Barley | mitochondrion | 89.23 | 72.2 |
| CDY18714 | Canola | endoplasmic reticulum, extracellular | 44.62 | 67.44 |
| KRH10589 | Soybean | cytosol | 45.64 | 63.57 |
| GSMUA_Achr5P05550_001 | Banana | cytosol, mitochondrion, plastid | 36.92 | 59.5 |
| CDY31323 | Canola | extracellular | 35.38 | 52.27 |
| TraesCS1B01G292400.1 | Wheat | nucleus | 19.49 | 18.81 |
| TraesCS7B01G153100.1 | Wheat | golgi | 25.64 | 8.94 |
| TraesCS2B01G294500.1 | Wheat | cytosol | 26.67 | 8.86 |
| TraesCS5B01G131200.1 | Wheat | cytosol | 15.9 | 8.38 |
| TraesCS2B01G063900.1 | Wheat | cytosol | 26.67 | 8.15 |
| TraesCS1B01G192700.1 | Wheat | cytosol, mitochondrion | 15.9 | 5.11 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G344100.1 | EnsemblPlantsGene:TraesCS6B01G344100 | Gene3D:3.10.50.40 | InterPro:IPR001179 | InterPro:PPIase_FKBP | InterPro:PPIase_FKBP_dom |
| PANTHER:PTHR10516 | PANTHER:PTHR10516:SF214 | PFAM:PF00254 | PFscan:PS50059 | SEG:seg | SUPFAM:SSF54534 |
| MapMan:18.12.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:606285921..606289018
Molecular Weight (calculated)
20486.4 Da
IEP (calculated)
9.791
GRAVY (calculated)
-0.326
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: AELLLLGGKV SAGGAAGSGA VAASSAGAGR CVAGRRRLAP VQPAALQWQH SSHTRTRTTT DQKPPRQRCA AAELWRGDAE DGKMGFEKEI LKAGTGPKPV
101: KGQKVTVHCT GYGKDGDLSK KFWSTKDPGQ QPFSFNIGLG SVIKGWDEGV MGMQLGEVAR LTCTPDYAYG TGGFPAWGIQ PNSVLIFEIE VLSAK
101: KGQKVTVHCT GYGKDGDLSK KFWSTKDPGQ QPFSFNIGLG SVIKGWDEGV MGMQLGEVAR LTCTPDYAYG TGGFPAWGIQ PNSVLIFEIE VLSAK
001: MGVEKQVIRP GNGPKPAPGQ TVTVHCTGFG KDGDLSQKFW STKDEGQKPF SFQIGKGAVI KGWDEGVIGM QIGEVARLRC SSDYAYGAGG FPAWGIQPNS
101: VLDFEIEVLS VQ
101: VLDFEIEVLS VQ
Arabidopsis Description
FKBP12Peptidyl-prolyl cis-trans isomerase FKBP12 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGG0]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.