Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037775.1-P | Field mustard | cytosol, mitochondrion, plastid | 91.96 | 91.96 |
| CDX84517 | Canola | cytosol, mitochondrion, plastid | 87.5 | 87.5 |
| CDY58272 | Canola | cytosol, mitochondrion, plastid | 84.82 | 84.82 |
| AT5G64350.1 | Thale cress | cytosol, mitochondrion, plastid | 83.93 | 83.93 |
| CDY46798 | Canola | cytosol | 53.57 | 81.08 |
| KRH21780 | Soybean | cytosol, mitochondrion, plastid | 80.36 | 80.36 |
| CDY18714 | Canola | endoplasmic reticulum, extracellular | 91.07 | 79.07 |
| Solyc01g105710.2.1 | Tomato | extracellular | 75.89 | 75.89 |
| PGSC0003DMT400083778 | Potato | cytosol | 75.0 | 75.0 |
| VIT_03s0017g01060.t01 | Wine grape | cytosol, mitochondrion, plastid | 74.11 | 74.11 |
| Zm00001d018134_P001 | Maize | mitochondrion | 72.32 | 72.32 |
| EES07562 | Sorghum | cytosol, mitochondrion, plastid | 71.43 | 71.43 |
| Os02t0760300-01 | Rice | extracellular | 70.54 | 70.54 |
| KRH10589 | Soybean | cytosol | 79.46 | 63.57 |
| CDY31323 | Canola | extracellular | 58.93 | 50.0 |
| CDY02979 | Canola | mitochondrion | 50.0 | 47.46 |
| TraesCS6A01G314100.1 | Wheat | plastid | 73.21 | 42.49 |
| TraesCS6B01G344100.1 | Wheat | plastid | 73.21 | 42.05 |
| TraesCS6D01G293400.1 | Wheat | cytosol | 73.21 | 42.05 |
| HORVU6Hr1G077340.1 | Barley | mitochondrion | 70.54 | 32.78 |
| CDY40236 | Canola | nucleus | 35.71 | 21.05 |
| CDY41214 | Canola | nucleus | 34.82 | 20.53 |
| CDY15104 | Canola | cytosol | 33.93 | 13.72 |
| CDY34049 | Canola | cytosol | 8.93 | 9.9 |
| CDX90622 | Canola | cytosol | 27.68 | 7.85 |
| CDY29061 | Canola | cytosol | 25.0 | 7.84 |
| CDX73664 | Canola | cytosol | 25.89 | 7.77 |
| CDX78057 | Canola | cytosol | 24.11 | 7.63 |
| CDX86295 | Canola | cytosol | 35.71 | 6.98 |
| CDX85348 | Canola | cytosol | 34.82 | 6.84 |
| CDY52281 | Canola | cytosol | 33.93 | 6.81 |
| CDY15103 | Canola | cytosol | 33.93 | 6.81 |
| CDY15096 | Canola | cytosol | 33.93 | 5.39 |
| CDY00829 | Canola | cytosol | 16.07 | 5.04 |
| CDX76177 | Canola | cytosol | 27.68 | 4.9 |
| CDY13167 | Canola | cytosol | 27.68 | 4.83 |
| CDY07563 | Canola | cytosol | 26.79 | 4.67 |
| CDX67584 | Canola | cytosol | 25.89 | 4.47 |
| CDY64639 | Canola | endoplasmic reticulum, extracellular | 4.46 | 1.87 |
| CDY00831 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX81222 | EnsemblPlantsGene:GSBRNA2T00134689001 | Gene3D:3.10.50.40 | GO:A0A078CWU3 | InterPro:IPR001179 | InterPro:PPIase_FKBP |
| InterPro:PPIase_FKBP_dom | PANTHER:PTHR10516 | PANTHER:PTHR10516:SF214 | PFAM:PF00254 | PFscan:PS50059 | ProteinID:CDX81222 |
| ProteinID:CDX81222.1 | SEG:seg | SUPFAM:SSF54534 | UniParc:UPI0004EE1C93 | MapMan:18.12.2 | : |
Description
BnaC09g06330D
Coordinates
chrLK031824:-:183550..184852
Molecular Weight (calculated)
12083.5 Da
IEP (calculated)
4.519
GRAVY (calculated)
-0.070
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVEKQVIRP GTGPKPTPGQ TVTVHCTGFG KGGDLSQQFW STKDAGQEPS LIFVFEMFLI TGWDEGVMGM QIGEVARLRC SPDYAYGAGG FPAWGIQPNS
101: VLDFEIEVLS VK
101: VLDFEIEVLS VK
001: MGVEKQVIRP GNGPKPAPGQ TVTVHCTGFG KDGDLSQKFW STKDEGQKPF SFQIGKGAVI KGWDEGVIGM QIGEVARLRC SSDYAYGAGG FPAWGIQPNS
101: VLDFEIEVLS VQ
101: VLDFEIEVLS VQ
Arabidopsis Description
FKBP12Peptidyl-prolyl cis-trans isomerase FKBP12 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGG0]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.