Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g112520.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G64350.1 | Solyc03g112520.2.1 | AT3G54170.1 | 9807817 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400083778 | Potato | cytosol | 99.11 | 99.11 |
| Zm00001d018134_P001 | Maize | mitochondrion | 83.93 | 83.93 |
| AT5G64350.1 | Thale cress | cytosol, mitochondrion, plastid | 83.93 | 83.93 |
| KRH21780 | Soybean | cytosol, mitochondrion, plastid | 83.04 | 83.04 |
| EES07562 | Sorghum | cytosol, mitochondrion, plastid | 82.14 | 82.14 |
| Bra037775.1-P | Field mustard | cytosol, mitochondrion, plastid | 81.25 | 81.25 |
| CDX84517 | Canola | cytosol, mitochondrion, plastid | 80.36 | 80.36 |
| CDY46798 | Canola | cytosol | 52.68 | 79.73 |
| VIT_03s0017g01060.t01 | Wine grape | cytosol, mitochondrion, plastid | 79.46 | 79.46 |
| Bra024287.1-P | Field mustard | cytosol, mitochondrion, plastid | 77.68 | 77.68 |
| Os02t0760300-01 | Rice | extracellular | 77.68 | 77.68 |
| CDY58272 | Canola | cytosol, mitochondrion, plastid | 77.68 | 77.68 |
| CDX81222 | Canola | cytosol, mitochondrion, plastid | 75.89 | 75.89 |
| CDY18714 | Canola | endoplasmic reticulum, extracellular | 80.36 | 69.77 |
| KRH10589 | Soybean | cytosol | 83.04 | 66.43 |
| GSMUA_Achr5P05550_001 | Banana | cytosol, mitochondrion, plastid | 58.93 | 54.55 |
| CDY31323 | Canola | extracellular | 58.04 | 49.24 |
| TraesCS6A01G314100.1 | Wheat | plastid | 83.93 | 48.7 |
| TraesCS6B01G344100.1 | Wheat | plastid | 83.93 | 48.21 |
| TraesCS6D01G293400.1 | Wheat | cytosol | 83.93 | 48.21 |
| HORVU6Hr1G077340.1 | Barley | mitochondrion | 79.46 | 36.93 |
| Solyc04g011620.2.1 | Tomato | nucleus | 38.39 | 23.12 |
| Solyc10g078260.1.1 | Tomato | cytosol | 41.07 | 10.65 |
| Solyc09g057660.2.1 | Tomato | cytosol | 42.86 | 8.62 |
| Solyc06g083190.2.1 | Tomato | extracellular | 42.86 | 8.36 |
| Solyc09g092690.2.1 | Tomato | cytosol | 41.07 | 7.92 |
| Solyc04g077660.2.1 | Tomato | cytosol | 34.82 | 6.68 |
| Solyc11g011420.1.1 | Tomato | cytosol, plastid | 32.14 | 6.16 |
| Solyc01g087470.2.1 | Tomato | cytosol | 16.96 | 5.85 |
| Solyc10g078250.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:18.12.2 | Gene3D:3.10.50.40 | EMBL:AY490245 | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005528 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016853 | GO:GO:0019538 | GO:GO:0061077 | InterPro:IPR001179 | PFAM:PF00254 | InterPro:PPIase_FKBP |
| InterPro:PPIase_FKBP_dom | PFscan:PS50059 | PANTHER:PTHR10516 | PANTHER:PTHR10516:SF214 | UniProt:Q2VY16 | SUPFAM:SSF54534 |
| EnsemblPlantsGene:Solyc01g105710.2 | EnsemblPlants:Solyc01g105710.2.1 | UniParc:UPI0000661E69 | : | : | : |
Description
Peptidyl-prolyl cis-trans isomerase FKBP12 [Source:Projected from Arabidopsis thaliana (AT5G64350) UniProtKB/Swiss-Prot;Acc:Q8LGG0]
Coordinates
chr1:-:93778200..93780682
Molecular Weight (calculated)
12055.4 Da
IEP (calculated)
7.253
GRAVY (calculated)
-0.339
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVEKEVIRA GNGPKPQPGQ TVTVHCTGYG KDRDLSQKFW STKDPGQQPF SFKIGQGKVI KGWDEGVLGM QLGEVARLTC TPDYAYGAGG FPAWGIQPNS
101: VLVFEIEVLG AQ
101: VLVFEIEVLG AQ
001: MGVEKQVIRP GNGPKPAPGQ TVTVHCTGFG KDGDLSQKFW STKDEGQKPF SFQIGKGAVI KGWDEGVIGM QIGEVARLRC SSDYAYGAGG FPAWGIQPNS
101: VLDFEIEVLS VQ
101: VLDFEIEVLS VQ
Arabidopsis Description
FKBP12Peptidyl-prolyl cis-trans isomerase FKBP12 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGG0]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.