Factsheet for Solyc04g011620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55520.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016257	Potato	nucleus	99.46	99.46
KRG97894	Soybean	cytosol	85.48	84.57
EES19645	Sorghum	nucleus	83.87	83.87
KRH30990	Soybean	cytosol	83.87	82.98
Os05t0458100-01	Rice	nucleus	82.26	82.26
VIT_13s0019g01900.t01	Wine grape	cytosol	82.8	81.91
GSMUA_AchrUn_...	Banana	nucleus	82.26	81.38
AT3G55520.1	Thale cress	nucleus	80.65	78.95
Os01t0844300-01	Rice	nucleus	78.49	78.92
Bra007173.1-P	Field mustard	nucleus	79.03	77.37
CDY40236	Canola	nucleus	79.03	77.37
CDY41214	Canola	nucleus	78.49	76.84
TraesCS1D01G282500.1	Wheat	nucleus	79.03	72.77
TraesCS1B01G292400.1	Wheat	nucleus	79.03	72.77
Zm00001d038368_P002	Maize	extracellular	83.33	61.75
HORVU1Hr1G072570.7	Barley	cytosol, nucleus, plastid	81.18	54.91
Solyc01g105710.2.1	Tomato	extracellular	23.12	38.39
Solyc09g057660.2.1	Tomato	cytosol	36.02	12.03
Solyc06g083190.2.1	Tomato	extracellular	36.56	11.85
Solyc10g078260.1.1	Tomato	cytosol	27.42	11.81
Solyc09g092690.2.1	Tomato	cytosol	33.33	10.67
Solyc11g011420.1.1	Tomato	cytosol, plastid	24.73	7.88
Solyc04g077660.2.1	Tomato	cytosol	22.04	7.02
Solyc01g087470.2.1	Tomato	cytosol	10.22	5.85
Solyc10g078250.1.1	Tomato	cytosol	2.15	4.4

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	ncoils:Coil	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	GO:GO:0061077	InterPro:IPR001179	UniProt:K4BPL5	PFAM:PF00254	InterPro:PPIase_FKBP
InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF326	SUPFAM:SSF54534	EnsemblPlantsGene:Solyc04g011620.2
EnsemblPlants:Solyc04g011620.2.1	UniParc:UPI0002765FF1	SEG:seg	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase FKBP20-1 [Source:Projected from Arabidopsis thaliana (AT3G55520) UniProtKB/Swiss-Prot;Acc:Q9M2S7]

Coordinates

chr4:-:4053218..4058441

Molecular Weight (calculated)

19893.7 Da

IEP (calculated)

7.266

GRAVY (calculated)

-0.479

Length

186 amino acids

Sequence
(BLAST)

001: MGDAIDLTGD GGVMKKIVQR SKPDAIAPSE SLPLVDVHYE GTLADTGEVF DTTREDNTIF SFEIGTGSVI KAWDVALRTM KVGEVAVITC KPEYAYGSAG
101: SPPDIPPEAT LVFEVELVAC RPRKGSSVSS ASDERARLEE LKKQRETAAA AKEEEKKKRE EAKAAAAARI QAKLEAKKGK GKGKAK

Best Arabidopsis Sequence Match ( AT3G55520.2 )
(BLAST)

001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK

Arabidopsis Description

FKBP20-1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VDC9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.