Factsheet for Bra007173.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55520.1	Bra024839.1-P	AT2G01950.1	19000166
AT3G55520.1	Bra024840.1-P	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40236	Canola	nucleus	100.0	100.0
AT3G55520.1	Thale cress	nucleus	92.11	92.11
Solyc04g011620.2.1	Tomato	nucleus	77.37	79.03
PGSC0003DMT400016257	Potato	nucleus	77.37	79.03
VIT_13s0019g01900.t01	Wine grape	cytosol	77.89	78.72
Os05t0458100-01	Rice	nucleus	76.84	78.49
KRG97894	Soybean	cytosol	77.37	78.19
GSMUA_AchrUn_...	Banana	nucleus	76.84	77.66
KRH30990	Soybean	cytosol	76.84	77.66
EES19645	Sorghum	nucleus	75.79	77.42
Os01t0844300-01	Rice	nucleus	73.68	75.68
TraesCS1D01G282500.1	Wheat	nucleus	74.74	70.3
TraesCS1B01G292400.1	Wheat	nucleus	74.74	70.3
Zm00001d038368_P002	Maize	extracellular	76.32	57.77
HORVU1Hr1G072570.7	Barley	cytosol, nucleus, plastid	75.79	52.36
Bra037775.1-P	Field mustard	cytosol, mitochondrion, plastid	22.63	38.39
Bra024287.1-P	Field mustard	cytosol, mitochondrion, plastid	21.58	36.61
Bra037477.1-P	Field mustard	cytosol	37.89	12.57
Bra013224.1-P	Field mustard	cytosol	34.21	11.46
Bra006895.1-P	Field mustard	cytosol	18.42	9.59
Bra012823.1-P	Field mustard	cytosol	16.32	8.68
Bra014849.1-P	Field mustard	cytosol	23.16	6.85
Bra003166.1-P	Field mustard	cytosol	22.63	6.66

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	EnsemblPlantsGene:Bra007173	EnsemblPlants:Bra007173.1	EnsemblPlants:Bra007173.1-P	ncoils:Coil
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179	UniProt:M4CSI1
PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF326
SUPFAM:SSF54534	UniParc:UPI0002542A95	SEG:seg	:	:	:

Description

AT3G55520 (E=3e-072) | immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative

Coordinates

chrA09:+:27724753..27725704

Molecular Weight (calculated)

20343.2 Da

IEP (calculated)

8.668

GRAVY (calculated)

-0.537

Length

190 amino acids

Sequence
(BLAST)

001: MGDEIDLSGD GGVLKQIVRR AKPDAIAPSD DFPVVDVHYE GVLAEDGKVF DTTREDNLVF SFELGSGSVI RSWDIALKTM KVGEVAKLTC KPEYAYGSGG
101: SPPDIPPNAT LIFEVELVAC RPRKGASVGS VSEDRARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGQ GKGKGKGKSK

Best Arabidopsis Sequence Match ( AT3G55520.2 )
(BLAST)

001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK

Arabidopsis Description

FKBP20-1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VDC9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.