CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55520.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0458100-01	Rice	nucleus	95.16	95.16
TraesCS1D01G282500.1	Wheat	nucleus	91.4	84.16
TraesCS1B01G292400.1	Wheat	nucleus	91.4	84.16
Solyc04g011620.2.1	Tomato	nucleus	83.87	83.87
PGSC0003DMT400016257	Potato	nucleus	83.87	83.87
VIT_13s0019g01900.t01	Wine grape	cytosol	82.8	81.91
GSMUA_AchrUn_...	Banana	nucleus	82.26	81.38
KRG97894	Soybean	cytosol	82.26	81.38
KRH30990	Soybean	cytosol	80.65	79.79
AT3G55520.1	Thale cress	nucleus	77.96	76.32
Bra007173.1-P	Field mustard	nucleus	77.42	75.79
CDY40236	Canola	nucleus	77.42	75.79
CDY41214	Canola	nucleus	76.34	74.74
Zm00001d038368_P002	Maize	extracellular	97.31	72.11
HORVU1Hr1G072570.7	Barley	cytosol, nucleus, plastid	93.01	62.91
EES07562	Sorghum	cytosol, mitochondrion, plastid	22.58	37.5
KXG25560	Sorghum	cytosol	36.56	12.3
EER88340	Sorghum	cytosol	33.87	10.64
EES07974	Sorghum	cytosol	19.35	9.78
OQU84952	Sorghum	cytosol	36.56	9.52
EER94808	Sorghum	cytosol	21.51	6.35
OQU80175	Sorghum	mitochondrion	5.38	6.21

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	EntrezGene:8061766	UniProt:C5YZ86	ncoils:Coil	EnsemblPlants:EES19645
ProteinID:EES19645	ProteinID:EES19645.1	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
GO:GO:0061077	InterPro:IPR001179	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059
PANTHER:PTHR10516	PANTHER:PTHR10516:SF326	EnsemblPlantsGene:SORBI_3009G162200	SUPFAM:SSF54534	unigene:Sbi.7307	UniParc:UPI0001A8956B
RefSeq:XP_002441215.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:51907742..51909780

Molecular Weight (calculated)

19870.7 Da

IEP (calculated)

7.416

GRAVY (calculated)

-0.443

Length

186 amino acids

Sequence
(BLAST)

001: MAEVIDLTGD GGVLKTVVRK AKDDAIAPSE SLPLVDVHYE GTLAETGEVF DTTHEDNSIF SFEIGQGAVI KAWDIALRTM KVGEVAKITC KSEYAYGAAG
101: SPPEIPPNAT LIFEVELLAC RPRKGSSVGS ASDEKARLEE LKKQRELAAA TKEEEKKKRE EAKAAAAARV QAKLDAKKGK GKGKGK

Best Arabidopsis Sequence Match ( AT3G55520.2 )
(BLAST)

001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK

Arabidopsis Description

FKBP20-1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VDC9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.