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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • vacuole 1
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, vacuole
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:vacuole
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
nucleus: 21087465
gfp PMID: 21087465 doi
JC Ahn, DW Kim, YN You, MS Seok, JM Park, H Hwang, BG Kim, S Luan, HS Park, HS Cho
Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-506, Korea.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G55520.1 Os10t0114400-01 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES19645 Sorghum nucleus 95.16 95.16
TraesCS1D01G282500.1 Wheat nucleus 94.09 86.63
TraesCS1B01G292400.1 Wheat nucleus 94.09 86.63
Os01t0844300-01 Rice nucleus 84.41 84.86
KRG97894 Soybean cytosol 83.87 82.98
Solyc04g011620.2.1 Tomato nucleus 82.26 82.26
PGSC0003DMT400016257 Potato nucleus 82.26 82.26
GSMUA_AchrUn_... Banana nucleus 82.8 81.91
VIT_13s0019g01900.t01 Wine grape cytosol 82.8 81.91
KRH30990 Soybean cytosol 82.26 81.38
Bra007173.1-P Field mustard nucleus 78.49 76.84
CDY40236 Canola nucleus 78.49 76.84
AT3G55520.1 Thale cress nucleus 78.49 76.84
CDY41214 Canola nucleus 77.42 75.79
Zm00001d038368_P002 Maize extracellular 95.7 70.92
HORVU1Hr1G072570.7 Barley cytosol, nucleus, plastid 95.7 64.73
Os02t0760300-01 Rice extracellular 23.12 38.39
Os04t0352400-01 Rice mitochondrion, plasma membrane 37.1 11.79
Os08t0525600-01 Rice cytosol, extracellular, plasma membrane, plastid 35.48 11.38
Os02t0491400-01 Rice plasma membrane 37.1 10.12
Os11t0148300-01 Rice cytosol 19.35 9.6
Os01t0564300-01 Rice cytosol, plasma membrane 21.51 9.48
Os12t0145500-01 Rice cytosol 18.82 9.46
Os01t0563000-04 Rice plasma membrane 25.27 7.21
Os03t0367000-01 Rice plasma membrane 23.12 6.8
Os01t0562400-01 Rice mitochondrion 20.43 6.6
Protein Annotations
MapMan:18.12.2Gene3D:3.10.50.40EntrezGene:4339000ProteinID:AAU44015.1EMBL:AK061127ProteinID:BAF17657.1
ProteinID:BAS94383.1ncoils:CoilProteinID:EEE63973.1GO:GO:0000413GO:GO:0003674GO:GO:0003755
GO:GO:0003824GO:GO:0005488GO:GO:0005528GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016853
GO:GO:0019538GO:GO:0061077InterPro:IPR001179EnsemblPlantsGene:Os05g0458100EnsemblPlants:Os05t0458100-01PFAM:PF00254
InterPro:PPIase_FKBPInterPro:PPIase_FKBP_domPFscan:PS50059PANTHER:PTHR10516PANTHER:PTHR10516:SF326UniProt:Q65XG1
SUPFAM:SSF54534UniParc:UPI000043F434RefSeq:XP_015637786.1RefSeq:XP_015637787.1SEG:seg:
Description
FK506 binding protein 20-1a, FK506-binding protein 20Similar to FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (p59 protein) (HSP binding immunophilin) (HBI) (FKBP52 protein) (52 kDa FK506 binding protein) (FKBP59). (Os05t0458100-01)
Coordinates
chr5:-:22492473..22494991
Molecular Weight (calculated)
19895.7 Da
IEP (calculated)
7.416
GRAVY (calculated)
-0.477
Length
186 amino acids
Sequence
(BLAST)
001: MAEVADLTGD GGVLKTVVRK AKDDAIAPTD SLPLVDVHYE GTLAENGEVF DTTHEDNSIF SFEIGQGAVI KAWDIALRTM KVGEVAKITC KPEYAYGSAG
101: SPPEIPPNAT LIFEVELVAC RPRKGSSLGS VSDEKARLEE LKKQRELAAA TKEEEKKKRE EAKAAAAARV QAKLDAKKGK GKGKGK
Best Arabidopsis Sequence Match ( AT3G55520.2 )
(BLAST)
001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK
Arabidopsis Description
FKBP20-1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VDC9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.