Factsheet for Os04t0352400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 15069638
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88340	Sorghum	cytosol	84.44	83.45
Zm00001d004243_P001	Maize	cytosol	83.08	82.65
TraesCS2D01G276000.2	Wheat	cytosol	82.56	82.28
HORVU2Hr1G067750.9	Barley	cytosol	83.25	82.26
TraesCS2A01G277100.1	Wheat	cytosol	81.71	82.13
TraesCS2B01G294500.1	Wheat	cytosol	81.54	81.26
Os08t0525600-01	Rice	cytosol, extracellular, plasma membrane, plastid	73.85	74.48
Os02t0491400-01	Rice	plasma membrane	70.43	60.41
Os02t0760300-01	Rice	extracellular	8.72	45.54
Os05t0458100-01	Rice	nucleus	11.79	37.1
Os01t0562400-01	Rice	mitochondrion	35.73	36.28
Os01t0844300-01	Rice	nucleus	11.11	35.14
Os01t0563000-04	Rice	plasma membrane	36.58	32.82
Os03t0367000-01	Rice	plasma membrane	30.77	28.48
Os11t0148300-01	Rice	cytosol	17.78	27.73
Os12t0145500-01	Rice	cytosol	17.44	27.57
Os01t0564300-01	Rice	cytosol, plasma membrane	18.8	26.07

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	Gene3D:3.30.1670.20	EntrezGene:4335556	EMBL:AF140495
EMBL:AK100844	ProteinID:BAF14449.1	ProteinID:BAS88734.1	ProteinID:CAE05842.2	ncoils:Coil	ProteinID:EAZ30344.1
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:0061077
InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlantsGene:Os04g0352400	EnsemblPlants:Os04t0352400-01
PFAM:PF00254	PFAM:PF13181	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059
PFscan:PS50293	PANTHER:PTHR10516	PANTHER:PTHR10516:SF338	UniProt:Q9XFE4	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF54534	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00001B1C10	RefSeq:XP_015634101.1
SEG:seg	:	:	:	:	:

Description

FK506 binding protein 62b, FK506 binding protein 65Peptidyl-prolyl cis-trans isomerase, FKBP-type domain containing protein. (Os04t0352400-01)

Coordinates

chr4:-:16813905..16817974

Molecular Weight (calculated)

65572.9 Da

IEP (calculated)

5.126

GRAVY (calculated)

-0.672

Length

585 amino acids

Sequence
(BLAST)

001: MADDAYDDLP MAGAEEEVDD VMKDELDEEG DSSSPVAMKV GEEKEIGKQG LRKRLLKEGE GWDRPESGDE VQVHYTGTLL DGTKFDSSRD RGTPFKFSLG
101: QGEVIKGWDE GIKTMKKGEQ AVFTVPPELA YGEAGSPPAI PPNATLRFDV ELLSWASVKD ICKDGGIFKK VLAEGHKWEN PKDLDEVLVK YEARLEDGTV
201: VSKSDGVEFA VKDGYFCPAL SKAVKTMKKG EKVLLTVKPQ YGFGEQGKPA SGAEAAVPPN ATLYVDLELL SWKTVTLIGD DKRILKKVLK EGEGYERPND
301: GAVVRVRFIG KLEDGTVFSK KGHDGDEPFE FRTDEEQVIE GLDRTVVTMK KGEVALVRLP PQHAFGSTET KQDLAVVPAN STVWYEVELV SFEKEKESWD
401: LKDNAEKIEA AAKKKDEGNV WFKMGKYAKA SKRYEKAAKY IEYDSSFTDD EKKQSKALKV SCKLNNAACK LKLKEYREAE KLCTKVLELE STNVKALYRR
501: TQAYIELADL ELAELDVKKA LEIDPDNRDV KMVYKTLKEK IKEYNKRDAK FYGNMFAKWR KLEHMENKKV PGKQEAQPMA IDSAA

Best Arabidopsis Sequence Match ( AT3G25230.2 )
(BLAST)

001: MDANFEMPPV GGMNDDDDMD FGDGASFLKV GEEKEIQQGL KKKLLKEGEG YETPENGDEV EVHYTGTLLD GTKFDSSRDR ATPFKFTLGQ GQVIKGWDIG
101: IKTMKKGENA VFTIPAELAY GESGSPPTIP ANATLQFDVE LLKWDSVKDI CKDGGVFKKI LAVGEKWENP KDLDEVLVKF EAKLEDGTVV GKSDGVEFTV
201: KDGHFCPALT KAVKTMKKGE KVLLTVKPQY GFGEKGKPAS AGEGAVPPNA TLEINLELVS WKTVSEVTDD NKVVKKVLKE GDGYERPNEG AVVKVKLIGK
301: LQDGTVFLKK GHGENEEPFE FKTDEEQVVD GLDRAVMKMK KGEVALVTID PEYAFGSNES QQELAVVPPN STVTYEVDLL TFDKERESWD MNTEEKIEAA
401: SKKKEEGNSK FKGGKYSLAS KRYEKAVKFI EYDTSFSEEE KKQAKALKVA CNLNDAACKL KLKDYKQAEK LCTKVLELES TNVKALYRRA QAYMELSDLD
501: LAEFDVKKAL EIDPNNREVK LEQKRLKEKM KEFNKKEAKF YGNMFAKLRI IKRWRGNEHL RS

Arabidopsis Description

ROF1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:B3H746]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.