Factsheet for Bra006895.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003119.1-P
Bra005402.1-P
Bra017216.1-P
Bra023087.1-P
Bra025359.1-P
Bra032856.1-P
Bra039042.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21640.1	Bra032856.1-P	AT1G27940.1	14517332
AT3G21640.1	Bra005402.1-P	AT2G34660.1	15133126
AT3G21640.1	Bra017216.1-P	AT2G36910.1	14517332
AT3G21640.1	Bra023087.1-P	AT2G36910.1	14517332
AT3G21640.1	Bra025359.1-P	AT3G28860.1	14517332
AT3G21640.1	Bra039042.1-P	AT3G28860.1	14517332
AT3G21640.1	Bra003119.1-P	AT5G52640.1	12410806

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78057	Canola	cytosol	95.62	98.59
Bra012823.1-P	Field mustard	cytosol	91.51	93.56
AT3G21640.1	Thale cress	cytosol	89.32	89.32
VIT_13s0064g00580.t01	Wine grape	cytosol	76.71	76.71
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	73.15	72.16
PGSC0003DMT400017681	Potato	cytosol	72.33	71.74
KRH39924	Soybean	endoplasmic reticulum	72.05	71.08
Solyc01g087470.2.1	Tomato	cytosol	62.47	70.15
GSMUA_Achr6P12690_001	Banana	cytosol	70.96	69.25
EES07974	Sorghum	cytosol	69.59	69.02
Zm00001d004930_P001	Maize	mitochondrion	68.49	66.84
Os12t0145500-01	Rice	cytosol	67.4	66.49
Os11t0148300-01	Rice	cytosol	67.95	66.13
TraesCS5A01G134500.3	Wheat	cytosol	65.75	65.04
TraesCS5B01G131200.1	Wheat	cytosol	65.75	64.86
TraesCS5D01G139000.1	Wheat	cytosol	65.21	64.32
HORVU5Hr1G041060.1	Barley	cytosol, plastid	66.03	56.71
Bra037775.1-P	Field mustard	cytosol, mitochondrion, plastid	8.77	28.57
Bra024287.1-P	Field mustard	cytosol, mitochondrion, plastid	8.22	26.79
Bra007173.1-P	Field mustard	nucleus	9.59	18.42
Bra013224.1-P	Field mustard	cytosol	26.85	17.28
Bra037477.1-P	Field mustard	cytosol	26.3	16.75
Bra014849.1-P	Field mustard	cytosol	21.37	12.15
Bra003166.1-P	Field mustard	cytosol	21.37	12.07

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	EnsemblPlantsGene:Bra006895	EnsemblPlants:Bra006895.1	EnsemblPlants:Bra006895.1-P
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M4CRQ4	PFAM:PF00254
PFAM:PF07719	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059	PFscan:PS50293
PANTHER:PTHR43811	PANTHER:PTHR43811:SF21	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI0002542DB4	:	:

Description

AT3G21640 (E=9e-194) TWD1, UCU2, FKBP42, ATFKBP42 | TWD1 (TWISTED DWARF 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase

Coordinates

chrA09:-:26034211..26036314

Molecular Weight (calculated)

41661.5 Da

IEP (calculated)

5.902

GRAVY (calculated)

-0.720

Length

365 amino acids

Sequence
(BLAST)

001: MDESLENQSQ TLDQENEIVT EGSAVVHGEP SQDGSVPPNV DTEVEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKH TQHKFEDTWQ EQQPIELVLG
101: KEKKEMAGLA IGVSSMKSGE RALLHIGWEL GYGKDGNFSF PNGPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNNLF KEDKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSAREDFRKA QKYAPDDNAI
301: RRELRGIAEQ EKAVYQKQKE MYKGMFVGRE ESGGKGKSRN WLIMLWQWLV SLFSRIFGRH RVKAD

Best Arabidopsis Sequence Match ( AT3G21640.1 )
(BLAST)

001: MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD

Arabidopsis Description

FKBP42Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V6X3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.